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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.B00786.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GeBP |
Protein Properties |
Length: 366aa MW: 38979.9 Da PI: 5.7733 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B00786.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 103.1 | 2.3e-32 | 57 | 156 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92
lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K++++v++ + g ++f+++h+q ife++
Pahal.B00786.1 57 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLNTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAIFEIA 151
79*************************8867778***************************************88899***************** PP
DUF573 93 kkiWg 97
+ iW+
Pahal.B00786.1 152 RTIWR 156
****8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SASAAPPAAG AGERRPLFQR 60 LWTDEDEIVI LRAFAEFTAQ RGTSFASHQY DTTPFYEDMR RRLNTGFTKN QLVEKIRRLK 120 RKYRNCVERL RVAGAGFTFR SPHEQAIFEI ARTIWRPDSD KHGRDSDDEG AANAHDGPLA 180 LDANGESTKS PTSRPRRGGR RRRTGDFPAD AAAETLALPP APMPVMAEDA LPSFPAAGMP 240 AMDAGVGMGG ISMDPAAGLP AAMSAAAAAS AVTGGGTAEN PILAALFKEM VRAMLSIGGG 300 VTAAPLGLEP PPAIAGMPME GEKWRQQRIR ELEVYLRRID LLQDQARAAL EELRSAPQAR 360 GGMNT*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT064599 | 0.0 | BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds. |
GenBank | EU972116 | 0.0 | EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G04930.2 | 7e-32 | DNA-binding storekeeper protein-related transcriptional regulator |