 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.B00745.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 313aa MW: 33820.4 Da PI: 8.5788 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B00745.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 56.8 | 5.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+ lv +v+++G+g+W+++++t g+ R+ k+c++rw +yl
Pahal.B00745.1 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPATTGLMRCSKSCRLRWTNYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 46.3 | 9.7e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg ++ +Ed l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l
Pahal.B00745.1 67 RGGFSDQEDRLIVHLQALLGNR-WAAIASYLP-YRTDNDVKNYWNTHL 112
7889******************.*********.************996 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MGRPPCCDKE GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PATTGLMRCS KSCRLRWTNY 60 LRPGIRRGGF SDQEDRLIVH LQALLGNRWA AIASYLPYRT DNDVKNYWNT HLKKKLLVQQ 120 HQHQQRAPST LSPPPNKGQW ELRLQTDIDL ARRALRDALS VPLAGKMMLS GTRGATAPAP 180 PPLPAESPPP ALVQAYALTA RDVSCMLDGW ARPTPGKKSG SPATPPPPVA AESASGSTSE 240 LTECSASISS APNRRAAPVA AQLFVREEKA AAGGEEVPLS EIESWLLEDG GGEQKPAHDG 300 LLLDAALYNF GF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU962848 | 1e-176 | EU962848.1 Zea mays clone 246006 myb transcription factor MYB30 mRNA, complete cds. |