PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00704.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1022aa    MW: 114266 Da    PI: 6.5775
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00704.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.12.7e-56211373118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e +krwl+++ei++iL n++ +++++e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fqr
  Pahal.B00704.2  21 QEaQKRWLRPTEICEILSNYKLFSIAAEPPNRPMSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQR 115
                     5559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+ywlLee++++ivlvhylevk
  Pahal.B00704.2 116 RTYWLLEEDFTHIVLVHYLEVK 137
                     *******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.57116142IPR005559CG-1 DNA-binding domain
SMARTSM010767.5E-7819137IPR005559CG-1 DNA-binding domain
PfamPF038598.9E-5022136IPR005559CG-1 DNA-binding domain
CDDcd001020.00422442530No hitNo description
Gene3DG3DSA:2.60.40.103.7E-9442531IPR013783Immunoglobulin-like fold
PfamPF018331.7E-6443526IPR002909IPT domain
SuperFamilySSF812967.62E-17443529IPR014756Immunoglobulin E-set
SuperFamilySSF484032.18E-15621736IPR020683Ankyrin repeat-containing domain
CDDcd002041.10E-11623734No hitNo description
Gene3DG3DSA:1.25.40.201.7E-15634738IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.741642736IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.805675707IPR002110Ankyrin repeat
SuperFamilySSF525401.43E-7841895IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045844866IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791845874IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055846865IPR000048IQ motif, EF-hand binding site
SMARTSM000150.05867889IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.212868892IPR000048IQ motif, EF-hand binding site
PfamPF006120.0015870889IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1022 aa     Download sequence    Send to blast
MAENRRFVLP GQPPDFSQIL QEAQKRWLRP TEICEILSNY KLFSIAAEPP NRPMSGSLFL  60
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGCK QSFSRVKEEF MQLSNVDSPS CSNSITSQNQ MGPQTMEAAE  180
SPISRQISDY EDTESDNFRA SSRYHPLAEM QQPVDGFITE NMFYASSSTV GSRQGYHGEM  240
LPTTANVDNH SLSHHDIARM FGDSNTGLST VSRILFDSVP FNEPFTDYST GFTEPTLHSS  300
FACLEANNMD NSSRLQTFTS EALYTNHLSK EEADALSFTG IPSSEVNGSR CTEGSIKHPL  360
LKQSSLDLMT IEPTGLKKHD SFSRWMSKEL EEVVDLGIKS TSDAFWSNIE TVKVPDGSNV  420
LTNEQLDAYV VSPSLSQDQL FSILNVSPSC VYIGTNTKVS VTGTFLVNKE HVENRKWSCM  480
FGNVEVPAEV LTDGTLRCYA PANQLGRVPF YVTCSNRVAC SEVREFEYRD PETQYMEPSP  540
SQANGVNEMH LHIRLEKLLT LGPDDHQVHV LSSGNEKYEL INAISSLMLD VKWSDQESPS  600
ANKVVSTARD QSLKKLVKEK LHHWLICKIN DDGKGPNVLC KEGQGVIHLV AALGYDWAIR  660
PIIVAGVNVN FRDAHGWTAL HWAASLGRER TIGVLITNGA AAGALTDPTS EFPSGRSPAD  720
LASVNGHKGI AGFLAESALT SHLSALTIRE SKDSTAEVCG LPAVEDLTGI NSTQLAGEDS  780
HAESLEGSLS AVRKSTQAAA RIFQAFRVES FHRKKVVEYG DGDCGLSDER TLSLVSVKPG  840
HDTHLHSAAV RIQNKFRGWK GRKEFMIIRQ RIVKLQAHVR GHQVRKSYRK VVWSVGIVEK  900
VILRWRRKRP GLRGFRPEKQ LEGPSQIQPA KAEDEYDFLH DGRRQAEASL QRALARVHSM  960
SQYPEAREQY HRLTTCVAEM KQSRMMQDEM LNDASGGDGN DFMAGLEDLI CMDDAAMPAI  1020
W*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570630.0EU957063.1 Zea mays clone 1581734 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793080.10.0calmodulin-binding transcription activator 2-like isoform X2
TrEMBLA0A2S3IQ720.0A0A2S3IQ72_9POAL; Uncharacterized protein
STRINGPavir.Ia03131.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains