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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B00704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CAMTA | ||||||||
Protein Properties | Length: 1023aa MW: 114337 Da PI: 6.5775 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 180.1 | 2.7e-56 | 21 | 137 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e +krwl+++ei++iL n++ +++++e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fqr Pahal.B00704.1 21 QEaQKRWLRPTEICEILSNYKLFSIAAEPPNRPMSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQR 115 5559******************************************************************************************* PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+ywlLee++++ivlvhylevk Pahal.B00704.1 116 RTYWLLEEDFTHIVLVHYLEVK 137 *******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.571 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 7.5E-78 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.9E-50 | 22 | 136 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 0.00422 | 443 | 531 | No hit | No description |
Gene3D | G3DSA:2.60.40.10 | 3.7E-9 | 443 | 532 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 1.7E-6 | 444 | 527 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 7.62E-17 | 444 | 530 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 2.18E-15 | 622 | 737 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.10E-11 | 624 | 735 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.7E-15 | 635 | 739 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.741 | 643 | 737 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.805 | 676 | 708 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.43E-7 | 842 | 896 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.045 | 845 | 867 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.791 | 846 | 875 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0055 | 847 | 866 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.05 | 868 | 890 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.212 | 869 | 893 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0015 | 871 | 890 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1023 aa Download sequence Send to blast |
MAENRRFVLP GQPPDFSQIL QEAQKRWLRP TEICEILSNY KLFSIAAEPP NRPMSGSLFL 60 FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL 120 LEEDFTHIVL VHYLEVKGCK QSFSRVKEEF MQLSNVDSPS CSNSITSQNQ MGPQTMEAAE 180 SPISRQISDY EDTESADNFR ASSRYHPLAE MQQPVDGFIT ENMFYASSST VGSRQGYHGE 240 MLPTTANVDN HSLSHHDIAR MFGDSNTGLS TVSRILFDSV PFNEPFTDYS TGFTEPTLHS 300 SFACLEANNM DNSSRLQTFT SEALYTNHLS KEEADALSFT GIPSSEVNGS RCTEGSIKHP 360 LLKQSSLDLM TIEPTGLKKH DSFSRWMSKE LEEVVDLGIK STSDAFWSNI ETVKVPDGSN 420 VLTNEQLDAY VVSPSLSQDQ LFSILNVSPS CVYIGTNTKV SVTGTFLVNK EHVENRKWSC 480 MFGNVEVPAE VLTDGTLRCY APANQLGRVP FYVTCSNRVA CSEVREFEYR DPETQYMEPS 540 PSQANGVNEM HLHIRLEKLL TLGPDDHQVH VLSSGNEKYE LINAISSLML DVKWSDQESP 600 SANKVVSTAR DQSLKKLVKE KLHHWLICKI NDDGKGPNVL CKEGQGVIHL VAALGYDWAI 660 RPIIVAGVNV NFRDAHGWTA LHWAASLGRE RTIGVLITNG AAAGALTDPT SEFPSGRSPA 720 DLASVNGHKG IAGFLAESAL TSHLSALTIR ESKDSTAEVC GLPAVEDLTG INSTQLAGED 780 SHAESLEGSL SAVRKSTQAA ARIFQAFRVE SFHRKKVVEY GDGDCGLSDE RTLSLVSVKP 840 GHDTHLHSAA VRIQNKFRGW KGRKEFMIIR QRIVKLQAHV RGHQVRKSYR KVVWSVGIVE 900 KVILRWRRKR PGLRGFRPEK QLEGPSQIQP AKAEDEYDFL HDGRRQAEAS LQRALARVHS 960 MSQYPEAREQ YHRLTTCVAE MKQSRMMQDE MLNDASGGDG NDFMAGLEDL ICMDDAAMPA 1020 IW* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957063 | 0.0 | EU957063.1 Zea mays clone 1581734 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793079.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X1 | ||||
TrEMBL | A0A2S3IQ52 | 0.0 | A0A2S3IQ52_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03131.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B00704.1 |