PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00493.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 490aa    MW: 52006.9 Da    PI: 8.2543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00493.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.3e-31207263259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK vkg e+prsYY+Ct+a+Cpvkkkvers  ++++++i+Y+g+Hnh+
  Pahal.B00493.1 207 DDGYNWRKYGQKAVKGGEYPRSYYKCTHASCPVKKKVERSG-EGHITQIIYRGQHNHQ 263
                     8***************************************9.***************8 PP
2WRKY104.17.6e-33375433159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  Pahal.B00493.1 375 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 433
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-27203265IPR003657WRKY domain
SuperFamilySSF1182909.68E-25205265IPR003657WRKY domain
SMARTSM007743.9E-33206264IPR003657WRKY domain
PfamPF031069.5E-24207263IPR003657WRKY domain
PROSITE profilePS5081123.399207265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-36362435IPR003657WRKY domain
SuperFamilySSF1182902.35E-29367435IPR003657WRKY domain
PROSITE profilePS5081137.172370435IPR003657WRKY domain
SMARTSM007741.0E-38375434IPR003657WRKY domain
PfamPF031061.7E-25376433IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAAHEASAPA TAAAGDGARR PPPRPTLSLP PRSAVESLFA GSSSAGAGAG ALFPDTPSPA  60
FHGSFTQLLV GAIGSPAACS AAPAVPTPPS PFSVPPGLSP TALLGSPGLF SPTGSFEMSH  120
QQALAQVTAQ AVHSQFNMVN HSDFSIPFSS TTRPALTSQH QHVNPTNVTS TQEISTLPSH  180
TGKNNIESNE VSQGLQNSAP TFDKPADDGY NWRKYGQKAV KGGEYPRSYY KCTHASCPVK  240
KKVERSGEGH ITQIIYRGQH NHQRPPKRRS KDGGGLLNEI DDFHENEDAS TRSEPGSQDY  300
SGKHGGSNDG IAGPPVSRRR EGDEQLSGSS DSEEEEDAEQ RVGNGDAGRA NANRRHVPTP  360
VQRIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTYQGCDVKK HIERSSQDPK  420
AVITTYEGKH SHDVPAARNS SHAAAAANAN ASSSTSLPHR GQNSASSRRR GADVSSASSM  480
LLKEENEIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-38207436878Probable WRKY transcription factor 4
2lex_A6e-38207436878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268RPPKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9577240.0EU957724.1 Zea mays clone 1612894 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794261.10.0probable WRKY transcription factor 3
TrEMBLA0A2T8I4D60.0A0A2T8I4D6_9POAL; Uncharacterized protein
STRINGSi035317m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-75WRKY DNA-binding protein 3