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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pahal.B00355.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
YABBY |
| Protein Properties |
Length: 169aa MW: 18995.4 Da PI: 9.0345 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B00355.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 229.6 | 8e-71 | 2 | 158 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeen.lksnvekeesasts 95
+++++se+vCyv+Cn+Cntil+v+vP+++++++vtv+CGhCt++ls++l+ ++q++ + ++ ++++++++++ n + s++ ++ + ++
Pahal.B00355.1 2 STQFASEHVCYVNCNYCNTILVVNVPNNCSYNIVTVKCGHCTMVLSMDLSPFQQARIVPDN-------QVVQNRGFHQYNnFGSYEPAS-RNLRT 88
67899*****************************************************997.......789999988765155555555.55566 PP
YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+s++++s+n+ + pp +rPPekrqrvPsaynrfikeeiqrik+snP+ishreafsaaaknWah+P++hfgl
Pahal.B00355.1 89 QSMYQMSNNQPQV----PP-MRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 158
6777888877554....44.8****************************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0007275 | Biological Process | multicellular organism development |
| GO:0010158 | Biological Process | abaxial cell fate specification |
| Sequence ? help Back to Top |
| Protein Sequence Length: 169 aa
Download sequence Send
to blast |
MSTQFASEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVKCG HCTMVLSMDL SPFQQARIVP 60
DNQVVQNRGF HQYNNFGSYE PASRNLRTQS MYQMSNNQPQ VPPMRPPEKR QRVPSAYNRF 120
IKEEIQRIKT SNPEISHREA FSAAAKNWAH LPRLHFGLSV ADGGGGSS*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU963149 | 1e-176 | EU963149.1 Zea mays clone 258350 protein YABBY mRNA, complete cds. |
| GenBank | EU970658 | 1e-176 | EU970658.1 Zea mays clone 348580 protein YABBY mRNA, complete cds. |
| GenBank | KJ727990 | 1e-176 | KJ727990.1 Zea mays clone pUT6110 C2C2-YABBY transcription factor (YAB3) mRNA, partial cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Ohmori Y,Abiko M,Horibata A,Hirano HY
A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype.
Plant Cell Physiol., 2008. 49(8): p. 1176-84
[PMID:18593744] - Ohmori Y,Toriba T,Nakamura H,Ichikawa H,Hirano HY
Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice.
Plant J., 2011. 65(1): p. 77-86
[PMID:21175891] - Li H, et al.
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
Plant Cell, 2011. 23(7): p. 2536-52
[PMID:21784949] - Tanaka W, et al.
The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet.
Plant Cell, 2012. 24(1): p. 80-95
[PMID:22286138] - Yang C,Ma Y,Li J
The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
J. Exp. Bot., 2016. 67(18): p. 5545-5556
[PMID:27578842]
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