PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00308.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 463aa    MW: 48724.9 Da    PI: 9.7002
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00308.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.28.5e-40592092133
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec....... 73 
                      g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++                +              
  Pahal.B00308.1  59 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdaatgfpahpasaagkD------Lpaladap 147
                     689*************************************************************99998866654444431......12233334 PP

             TCP  74 eaesssssasnsssg.kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                      ++++  ++++++++ ++ + + +s+ s++s+ s+l+l++ esr kar+rarer++    ++
  Pahal.B00308.1 148 HDDDDDDQDQHQHHHhQQLTRSGCSSTSETSKGSVLSLSRsESRVKARERARERSAAARDKD 209
                     333333333334444266666679*****************************998776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-4160205IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18961119IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.992188208IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEAVVAGDGR SKRGRVKAAD GAGPEPGPKR SRAAPAAALP APWAQQHPAS RIYRVSRASG  60
GKDRHSKVYT AKGIRDRRVR LSVATAIQFY DLQDRLGYDQ PSKAIEWLIK AAAAAIDKLP  120
SLDAATGFPA HPASAAGKDL PALADAPHDD DDDDQDQHQH HHHQQLTRSG CSSTSETSKG  180
SVLSLSRSES RVKARERARE RSAAARDKDK DPADDAATGR RAAPTASAQA ASFTELLTGM  240
AAATAAAGSA PAEHKQQQQQ QQQQHQSSAP WQAMAVPATA DYIGFAQPRK AAGHAMAHSF  300
ASPAPHLGNI ASIAMAPAQH FGLASGAVTI ASGGGGGGEP HAEMTQFSFL QDHFMPVHAA  360
PASGPAGDYN LNFSMSSGLV GVNSRGTLQS NSQPHISGHH HHHHHHNQQL QRLSTPLDAP  420
NIPFLFSPAA AVTTPTTAES QFAAFQLWNG FQHADMKEKG KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-3066120155Putative transcription factor PCF6
5zkt_B3e-3066120155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1904561e-153EU190456.1 Zea mays RFLP probe php20581 (CBM 2.10) genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803763.10.0transcription factor PCF6-like
TrEMBLA0A3L6QSQ60.0A0A3L6QSQ6_PANMI; Transcription factor PCF6
STRINGPavir.Ba03864.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-36TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2