PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00159.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 398aa MW: 42183.5 Da PI: 10.4396

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00159.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.4e-31	240	295	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r+ W+peLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Pahal.B00159.1 240 KARRTWSPELHRQFVAALSQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 295 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.649	237	297	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-16	238	298	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-28	238	298	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.6E-25	240	295	IPR006447	Myb domain, plants
Pfam	PF00249	9.0E-7	242	293	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MGLDVLEIGM GSDLSLDLRY FASKAVRQAR DAPASDVDAC IRRLEEERGK IEMFRRELPL 60 CARLLAEVID VMKAEAGTKT KSDRKAAVAA EEDGAAGDKS KWMSTAQLWT GDSGREDAES 120 EKQDKGRSSP EAKSRGGGGA FLPFKAVGSG APAFAPLCLR VDDKAADAGT PDLSLLSPPA 180 IKSSPAAAGA AEENRRQVVG FAQAAARAVA MAPSGPSLTL QSQPQQTAQQ QQQQQQAARK 240 ARRTWSPELH RQFVAALSQL GGAQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHNRRAP 300 GSAVVSQPIV LVGRFGSPRS KAAHSLDPPR APSTSQHRAS PSHRRPPSAV RRKMACPRAV 360 AGNDEEAAAS SAFRQTGFDG SRATVMSPIT ASGGSHE*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MGLDVLEIGM GSDLSLDLRY FASKAVRQAR DAPASDVDAC IRRLEEERGK IEMFRRELPL  60
CARLLAEVID VMKAEAGTKT KSDRKAAVAA EEDGAAGDKS KWMSTAQLWT GDSGREDAES  120
EKQDKGRSSP EAKSRGGGGA FLPFKAVGSG APAFAPLCLR VDDKAADAGT PDLSLLSPPA  180
IKSSPAAAGA AEENRRQVVG FAQAAARAVA MAPSGPSLTL QSQPQQTAQQ QQQQQQAARK  240
ARRTWSPELH RQFVAALSQL GGAQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHNRRAP  300
GSAVVSQPIV LVGRFGSPRS KAAHSLDPPR APSTSQHRAS PSHRRPPSAV RRKMACPRAV  360
AGNDEEAAAS SAFRQTGFDG SRATVMSPIT ASGGSHE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-14	240	293	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-14	240	293	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-14	240	293	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-14	240	293	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804519.1	0.0	transcription factor NIGTH1-like
TrEMBL	A0A2T8KMG4	0.0	A0A2T8KMG4_9POAL; Uncharacterized protein
STRING	Pavir.Ba02240.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1817	37	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-30	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.B00159.1