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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pahal.B00155.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 358aa MW: 38994.1 Da PI: 10.5433 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B00155.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 353.3 | 5.4e-108 | 1 | 357 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.................rernlalsekkaavaerd................... 57
mdddgs rn+g+ye k nlglqlmss++ +rd+k+ +++++ +++++++++r
Pahal.B00155.1 1 MDDDGSLGiRNWGFYETV---KGNLGLQLMSSVPpDRDTKPllpnggnflqhhghhnaQHQHQHQQHPQHSHHPRGgggggggssgapggmptep 92
9*****999******988...************99**********9999998776554333333444555555555******************* PP
GAGA_bind 58 ....maflqrdkalae...rnkalverdnkllalllvensla...........salpvgvqvlsgtksidslqq.lse.....pqledsavelre 128
m+f++++++l+ ++++ + r++k+l+ l+v +++p+g++++ +++ +++l++ + + pq ++ + ++
Pahal.B00155.1 93 pavhMDFVRNEAWLHPsqhHHQHQHSRQQKVLHHLPVGPVGHvghpghgghavHHHPSGYGMMADAHGVHTLHMmQPQpqpqpPQQ-PQDPPPTK 186
***************943334555678888888888776555678999999999*********99999998888333444443222.22222456 PP
GAGA_bind 129 eeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCY 223
ee + ++pie+ +++ k+++ +kkrq++++pk++k kk+kk ++++++ ++++ +r + ++k++++v+ng++lD s++P+PvCsCtGa++qCY
Pahal.B00155.1 187 EESMPQPPIED-HPVLKNEPPVKKRQQGRQPKSPKPKKPKK-VAAPQENGAPNKPAPRPRGPRKTVGMVINGIDLDLSRIPTPVCSCTGAPQQCY 279
77788899888.667777788888*****************.66777888877777*************************************** PP
GAGA_bind 224 kWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+lsnp+DLk++WAkHGtnkfv ir
Pahal.B00155.1 280 RWGAGGWQSACCTTSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLSNPIDLKTFWAKHGTNKFVVIR 357
****************************************************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MDDDGSLGIR NWGFYETVKG NLGLQLMSSV PPDRDTKPLL PNGGNFLQHH GHHNAQHQHQ 60
HQQHPQHSHH PRGGGGGGGG SSGAPGGMPT EPPAVHMDFV RNEAWLHPSQ HHHQHQHSRQ 120
QKVLHHLPVG PVGHVGHPGH GGHAVHHHPS GYGMMADAHG VHTLHMMQPQ PQPQPPQQPQ 180
DPPPTKEESM PQPPIEDHPV LKNEPPVKKR QQGRQPKSPK PKKPKKVAAP QENGAPNKPA 240
PRPRGPRKTV GMVINGIDLD LSRIPTPVCS CTGAPQQCYR WGAGGWQSAC CTTSISTYPL 300
PMSTKRRGAR IAGRKMSQGA FKKVLEKLAG EGYNLSNPID LKTFWAKHGT NKFVVIR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
