 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.B00016.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 288aa MW: 31569.5 Da PI: 8.304 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B00016.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14 | 0.00015 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C + F++ L H+++H
Pahal.B00016.1 64 YTCTFCRREFRSAQALGGHMNVH 86
9********************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MEQMAKYYWA TLGARTAAAA ATSSSLRSWP PPAHHAGEPS WEELAFAQDA AGHLGGCVWP 60
PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLRQCASPD HEVIIQDAQN KQQQYPSIAA 120
APPADHHQLL QPQPKAVLIS APKSTTCCDH QAACNKAEGA VISTTTTTSP SYISTIIKES 180
KNKVVISIPA AATAGSKQAL DQIDEEEEEE EEEIVADRRK RRRVVHQQPE AFFFLRPLAS 240
SKGVEQHDAK VQKVIRSPSP NSSLHQLAGR QEVDLELRLG SSSPKLK*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 218 | 222 | RKRRR |
| 2 | 219 | 223 | KRRRV |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU973083 | 3e-77 | EU973083.1 Zea mays clone 393033 zinc finger, C2H2 type family protein mRNA, complete cds. |
