PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03950.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 359aa    MW: 37154.1 Da    PI: 7.6163
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00061155177123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k+F++   L  H  +H
  Pahal.A03950.1 155 YECKTCNKCFPTFQALGGHRASH 177
                     99**********99999998887 PP
2zf-C2H211.60.00084252274123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F +   L  H+r+H
  Pahal.A03950.1 252 HECSICGAEFASGQALGGHMRRH 274
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-8154177No hitNo description
PfamPF139122.1E-11154179IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097155182IPR007087Zinc finger, C2H2
SMARTSM003550.094155177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-8247274No hitNo description
PfamPF139121.6E-12251275IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64252279IPR007087Zinc finger, C2H2
SMARTSM003550.016252274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280254274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MHTSEAVEVP DTREIAKPPP LVVMPTSSTE HSAGELDRHQ QPPLAAAVKR KRTKRPRHHP  60
PASSASSSES TTTEEEDMAH CLILLAQGAA GGSSGAHAAV DSKPSPSPAP APQQAQPSPP  120
AAAPPPAVKS ERYTSRKYTE AATTVDGVKA GFYVYECKTC NKCFPTFQAL GGHRASHKKP  180
RLAGADDEIA INVVTASTAI KQQKPPMATA SPPPPLPPAL QPQMDVAVFP DVTTALSLNS  240
VAISSSKQLR VHECSICGAE FASGQALGGH MRRHRPLNAP ERAVTAIAGV DTKKEGSAGI  300
NLELDLNLPA PSDEEAVSVS VSLPAAAAPA VVLGLGQFSD GKKAGLMLTA SALVDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039893e-68AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040263e-68AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149583e-68AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126103e-68CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822199.10.0zinc finger protein ZAT5-like
TrEMBLA0A2S3GUR40.0A0A2S3GUR4_9POAL; Uncharacterized protein
STRINGPavir.Ab03370.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-40C2H2 family protein