PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03392.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 170aa    MW: 19617 Da    PI: 9.3326
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03392.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.11.8e-1379138463
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      +r rr+++NRe+ArrsR RK++++ eL   v  L + N++L ++l++    ++++  e+
  Pahal.A03392.1  79 ERRKRRMISNRESARRSRMRKQKQLSELWAQVVHLRSTNRQLLDQLNHVIRDCDRVLHEN 138
                     689********************************************9999999887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.7E-1075131No hitNo description
SMARTSM003383.2E-1476140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.35878141IPR004827Basic-leucine zipper domain
PfamPF001701.1E-1078138IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.44E-1280129No hitNo description
CDDcd147024.19E-1681132No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MYPAEIASVP YLSPASAASF KPHYHAATND FLFQYSNLLV PHPSYYQDVA HLVHEASLPV  60
GNKSNSEESD DYQRSLAEER RKRRMISNRE SARRSRMRKQ KQLSELWAQV VHLRSTNRQL  120
LDQLNHVIRD CDRVLHENSL LRDEQTKLQR QLEKLTVETT KSGVMSPDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
179100RRKRRMISNRESARRSRMRKQK
29299RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818633.11e-123basic leucine zipper 8-like
TrEMBLA0A2S3GTL71e-121A0A2S3GTL7_9POAL; Uncharacterized protein
STRINGSi019897m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.19e-26basic leucine-zipper 42