PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Binding Motif |

Publication

Basic Information? help Back to Top

TF ID

Pahal.A03378.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HD-ZIP

Protein Properties

Length: 290aa MW: 31915 Da PI: 4.3795

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A03378.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.9	1.2e-20	34	87	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA+klgL+ rqV vWFqNrRa++k Pahal.A03378.3 34 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 87 5678*************************************************9 PP
2	HD-ZIP_I/II	132.3	1.8e-42	33	125	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal+++++ L +++++Lr+++++ Pahal.A03378.3 33 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDVLLQDNHRLRSQVAS 125 69**************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.9E-20	28	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.22	29	89	IPR001356	Homeobox domain
SMART	SM00389	2.0E-20	32	93	IPR001356	Homeobox domain
Pfam	PF00046	6.2E-18	34	87	IPR001356	Homeobox domain
CDD	cd00086	2.68E-20	34	90	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.7E-22	35	96	IPR009057	Homeodomain-like
PRINTS	PR00031	1.7E-6	60	69	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	64	87	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.7E-6	69	85	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.3E-17	89	131	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001558	Biological Process	regulation of cell growth
GO:0009637	Biological Process	response to blue light
GO:0009651	Biological Process	response to salt stress
GO:0009965	Biological Process	leaf morphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MLGLEEGRGV KRPFFTSPDE LLEEEYYDEQ LPEKKRRLTP EQVHLLERSF EEENKLEPER 60 KTELARKLGL QPRQVAVWFQ NRRARWKTKQ LERDFDRLKA SFDALRADHD VLLQDNHRLR 120 SQVASLTEKL QEKEATEGGA DAEVLPVDVK ASLADDIEEP ATEAAAAFEA HQVKSEDRLS 180 TGSGGSAVVD TDALLCGRFA AAVDSSVESY FPGGEGHYHD CGMGPVNHCA GGIQSDDDGA 240 GSDEGCSYYP EEAEAAAAAA VAAAFFAGHA HPHADDDEDA SQIGWWMWN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	89	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00323	DAP	Transfer from AT3G01470	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU961949	0.0	EU961949.1 Zea mays clone 239214 homeodomain leucine zipper protein CPHB-5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813032.1	0.0	homeobox-leucine zipper protein HOX16-like isoform X2
Swissprot	A2X980	1e-120	HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
Swissprot	Q6YWR4	1e-120	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	A0A2S3GT43	0.0	A0A2S3GT43_9POAL; Uncharacterized protein
STRING	Pavir.Ab02950.1.p	1e-164	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	9e-66	homeobox 1

Link Out ? help Back to Top
Phytozome	Pahal.A03378.3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]