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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.A03349.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 271aa MW: 29596.4 Da PI: 5.5865 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.A03349.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 49.9 | 7.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT eEd++lv +G +W+++++ g+ R++k+c++rw +yl
Pahal.A03349.1 14 KGPWTVEEDQKLVAFLLSHGHCCWRLVPKLAGLLRCGKSCRLRWTNYL 61
79******************************99************97 PP
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2 | Myb_DNA-binding | 55 | 1.9e-17 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++eE+ l +d+++qlG++ W++Ia+ ++ gRt++++k++w+++
Pahal.A03349.1 70 LSEEEEALVIDLHAQLGNR-WSKIAAQLP-GRTDNEIKNHWNTH 111
599****************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 271 aa
Download sequence Send
to blast |
MGRQPCCEKV GLKKGPWTVE EDQKLVAFLL SHGHCCWRLV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEEEEALVID LHAQLGNRWS KIAAQLPGRT DNEIKNHWNT HIKKKLKKMG 120 IDPVTHRPLS PARPEEVFPL AQQRHDPPHV REGRCDDEPK QALSSRGLPG AEDDEDEEAP 180 ASAQPQGATS PASTAAAVSP SCSSSSTASA SFATPGADVA AWSDPIDLFQ VDSIMDMDWA 240 GILSGCGEDG AGIDVDLFDH YPGFDQQVWM *
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU964620 | 1e-166 | EU964620.1 Zea mays clone 280394 odorant 1 protein mRNA, complete cds. |