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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.A03243.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
TCP |
Protein Properties |
Length: 401aa MW: 40413.5 Da PI: 9.8124 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.A03243.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 130.4 | 1.8e-40 | 58 | 234 | 1 | 137 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88
aa+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++
Pahal.A03243.1 58 AAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSFSAPahlraa 152
689*******************************************************************9998777777777755555788888 PP
TCP 89 ..............................kaaksaakskksqksaasalnlakesrakarar..are.rtrekmriknkln 137
++++s + + +s + l+++ + +a a a +r+ r++++m++ ++++
Pahal.A03243.1 153 lpspataarfgradawdrvvglgfpsegpaSSSSSPSPLLLNFHSGSIGLDVQPSPSAAAAAAdiSRKrRWEQEMQQAQQQQ 234
99999999999999999***99999999965555555888888888888888885555444444666667777777666555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MDVAGDGGGG RRPNFPLQLL EKKEEQPCSS SAAVGTSAGG NAGNGSGAAG GEVQVRKAAP 60 KRSSTKDRHT KVEGRGRRIR MPALCAARVF QLTRELGHKT DGETIEWLLQ QAEPAVIAAT 120 GTGTIPANFT SLNISLRSSG SSFSAPAHLR AALPSPATAA RFGRADAWDR VVGLGFPSEG 180 PASSSSSPSP LLLNFHSGSI GLDVQPSPSA AAAAADISRK RRWEQEMQQA QQQQQQQQQQ 240 QQYQQQMAGY TQSQMPGTVW MVPSSNSTQG GAPSGGGGGG SGGGGSGESI WTFPQMGSAA 300 AAAAVYRGSV PSGLHFMNFP APVALLPGQQ LGLGAVGSGG GGGEGHMGIL AALNAYRTQA 360 ATDPTAGQGG GGSTGGGGSG QQQHGGGRGE RHESMSTSDS *
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 273 | 285 | SGGGGGGSGGGGS |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC201762 | 0.0 | AC201762.5 Zea mays BAC clone CH201-479M22 from chromosome 5, complete sequence. |
GenBank | AC215174 | 0.0 | AC215174.5 Zea mays BAC clone CH201-70P8 from chromosome 5, complete sequence. |
GenBank | KJ728060 | 0.0 | KJ728060.1 Zea mays clone pUT6206 TCP transcription factor (TCP26) gene, partial cds. |