PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02932.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 418aa    MW: 44207.1 Da    PI: 9.8594
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02932.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.24.5e-30102194189
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++   ++
  Pahal.A02932.1 102 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANEKGLLLSFEDSAGKHWRFRYSYWNSSQSYVMTKGWSRFVKEKRLVAGDTVSFSRAAAED 194
                     89***************************955556888*************************************************664333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-4194206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2999208IPR015300DNA-binding pseudobarrel domain
CDDcd100175.72E-26100189No hitNo description
PfamPF023622.5E-27102202IPR003340B3 DNA binding domain
SMARTSM010192.8E-20102207IPR003340B3 DNA binding domain
PROSITE profilePS5086314.663102205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDHHFAAASG RFSRSEAADE EQEADASNSR REISFMPAAA AATASSSAAA SGSASTSASA  60
SASGSSSAAP FRSASGDGAG ASGSGGGGGS GDAEAVEKEH MFDKVVTPSD VGKLNRLVIP  120
KQYAEKYFPL DAAANEKGLL LSFEDSAGKH WRFRYSYWNS SQSYVMTKGW SRFVKEKRLV  180
AGDTVSFSRA AAEDARHRLF IDWKRRVDTR GPLRFSGLAL PMPLASHYGP HHYSPWGFGG  240
GGGGGGFFMP PSPPATLYEH RLRQGLDFRG MTYPAPTVGR QLLFFGSART MPPHAPLQPR  300
APTLPLHYTV QPSAAGVTAA SRPVVLDSVP VIESPTTAAK RVRLFGVNLD NNPQQDGGEA  360
SHQGNALSLQ MPGWQQRTPT LRLLELPRHG AESSAASSPS SSSSSKREAR SALDLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-58972063113B3 domain-containing transcription factor NGA1
5os9_B9e-58972063113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0884010.0BT088401.1 Zea mays full-length cDNA clone ZM_BFc0175G08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794708.10.0B3 domain-containing protein Os02g0683500-like
SwissprotQ6EU301e-150Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A2S3GSD90.0A0A2S3GSD9_9POAL; Uncharacterized protein
STRINGPavir.Aa00929.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-60B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]