PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Pahal.A02912.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRF

Protein Properties

Length: 230aa MW: 23810 Da PI: 10.0481

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02912.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.9	1.1e-25	133	177	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ Pahal.A02912.1 133 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEA 177 69****************************************985 PP
2	QLQ	53.3	8.6e-19	67	103	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k Pahal.A02912.1 67 SALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 103 799*********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.5E-6	67	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.225	68	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.4E-11	68	102	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.701	133	177	IPR014977	WRC domain
Pfam	PF08879	3.3E-21	134	176	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MADDKETDSA QPPAKLPRLS GADTSAGEVT MAASSPLVLG LGLGLGAGGG ERDAEASAAT 60 AAPKRASALT FMQQQELEHQ VLIYRYFAAG APVPVHLVLP IWKSVVASSF GPQRFPSLMG 120 LGSLCFDYRS SMEPEPGRCR RTDGKKWRCS RDVVPGHKYC ERHVHRGRGR SRKPVEAASA 180 AAPTTAAAAV SSSRSGAPVH HHGGAGVAPH GLGFSPTSVL LAHSAARAT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727857	0.0	KJ727857.1 Zea mays clone pUT5948 GRF transcription factor (GRF9) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816416.1	1e-164	growth-regulating factor 10-like isoform X2
Swissprot	Q6EPP9	1e-98	GRF10_ORYSJ; Growth-regulating factor 10
TrEMBL	A0A2S3GSC0	1e-163	A0A2S3GSC0_9POAL; Uncharacterized protein
STRING	Si018252m	1e-126	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6221	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36400.1	2e-36	growth-regulating factor 3

Link Out ? help Back to Top
Phytozome	Pahal.A02912.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]