PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02820.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 710aa    MW: 73768.7 Da    PI: 5.8735
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02820.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.78.9e-863517083374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y++eAL   la+         +++ ts+ +++ +laa+k fs++sP+l+f+++t
  Pahal.A02820.1 351 DELAAAAKAAEAGNSIGAREILARLNHQLPPLGKPFLRSASYLKEALLLALAE-----GYHGACRLTSPLDVALKLAAYKSFSDLSPVLQFTNFT 440
                     7899************************************************9.....33457778888889*********************** PP

            GRAS  98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     a qa+l++++g+  +++H+iDfd++ G+QW+++lq+La R+    +  p +++T+++s++s++  el+ t++++a+fA+ lg+pfefn++   + 
  Pahal.A02820.1 441 ATQALLDEIAGStaSCIHVIDFDLGVGGQWASFLQELAHRRgaggAALPFVKLTAFVSAASHHPLELRLTRDNIAQFAADLGIPFEFNAV---SA 532
                     **********998899************************977555589****************************************8...77 PP

            GRAS 187 edleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     +++++ eL   + +E++aV l +          +     +++L+lvk+l Pk+vv +++  d+ + +F ++fl++++ ++ l+dsl+a  + +++
  Pahal.A02820.1 533 DTINPAELISTTgDEVVAVVLPVGCSARA---PP----LPAILQLVKQLGPKIVVAIDHGGDRADLPFSQHFLNCFQSCVFLLDSLDAA-GIDAD 619
                     88999888666569*******99776665...44....556*********************************************888.7899* PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + k+E++l++++i+++v  +g++     e+ + Wr+++++aGF pvp s+ a++qa++ll++v+++g++ve+    l+l+W++ +Lv+vSaWr
  Pahal.A02820.1 620 SACKIEKFLIQPRIEDAVLGRGKA-----EKPMAWRSAFTAAGFAPVPPSNLAEAQADCLLKRVQVRGFHVEKCGVGLTLYWQRGELVTVSAWR 708
                     **********************99.....999*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.623323688IPR005202Transcription factor GRAS
PfamPF035143.1E-83351708IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MRAALFGVER NGAADLVGGG KALFWPEGKA KALVEPRSVL DCTRSPSPNN STSTLSSSLG  60
GGAADSTGVA AVSDSSAAAA AEATKWGAPG EHGGGGKEDW AGGCELPPIP AGLDMGLVGG  120
DSWDAVLGNA AAAGQDQTFL NWIIGAAGDL DQQGPPLPVH QQQLLDNAGF GFPAADPLGF  180
SLDPHLGGVA SDMSSPGPVS HTTNSGGGSK ASSAFGLFST ESASLQTPPP PVLFHEGIDI  240
KPPLLGAQPP GPLLHQFQHQ PPPATTFFMP LPSFPDHNQQ SALLQPPPKR HQSMRDDLYL  300
ARNRAAAAAA QGLPFPPLHG PAPFQLQPSP PPPHGAMKTT AAEAAQQQLL DELAAAAKAA  360
EAGNSIGARE ILARLNHQLP PLGKPFLRSA SYLKEALLLA LAEGYHGACR LTSPLDVALK  420
LAAYKSFSDL SPVLQFTNFT ATQALLDEIA GSTASCIHVI DFDLGVGGQW ASFLQELAHR  480
RGAGGAALPF VKLTAFVSAA SHHPLELRLT RDNIAQFAAD LGIPFEFNAV SADTINPAEL  540
ISTTGDEVVA VVLPVGCSAR APPLPAILQL VKQLGPKIVV AIDHGGDRAD LPFSQHFLNC  600
FQSCVFLLDS LDAAGIDADS ACKIEKFLIQ PRIEDAVLGR GKAEKPMAWR SAFTAAGFAP  660
VPPSNLAEAQ ADCLLKRVQV RGFHVEKCGV GLTLYWQRGE LVTVSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2242470880375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635040.0BT063504.1 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817823.10.0scarecrow-like protein 27
TrEMBLA0A2S3GRU00.0A0A2S3GRU0_9POAL; Uncharacterized protein
STRINGSi016508m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-82GRAS family protein