PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02790.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 318aa    MW: 33761.8 Da    PI: 6.404
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02790.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20137188256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  Pahal.A02790.1 137 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 188
                     8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-32136196IPR001471AP2/ERF domain
CDDcd000182.38E-30137196No hitNo description
SuperFamilySSF541712.09E-22137196IPR016177DNA-binding domain
SMARTSM003808.5E-38137201IPR001471AP2/ERF domain
PROSITE profilePS5103224.25137195IPR001471AP2/ERF domain
PfamPF008471.4E-14137187IPR001471AP2/ERF domain
PRINTSPR003671.9E-13138149IPR001471AP2/ERF domain
PRINTSPR003671.9E-13177197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDFSGEIDDF NMQFIREQLL GGEACLPVVN VPGAAAYSAP SVHPAAQAAF QHPAAFVPQP  60
QHLHQAAYVD LTNEYADAAA AVAEAAFRAE PVMIRFGGEP SPVSDPGRRP LLTISLPPTS  120
HAWGPAAAAM DANDFRKYRG VRQRPWGKFA AEIRDPKKRG SRVWLGTYDT AIEAARAYDR  180
AAFRMRGAKA ILNFPNEVGS RGADFLAPPP PPPQSSQQNK RKLAHDAAEA EPAAKSVKAE  240
AFGSPASSLT SSLSPATTTA STVTATSSPS SEAGATEMFP FSMTPSSWTW EQLEGFFGSL  300
SPLSPHPQLG FPEVTVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-28136200468ATERF1
3gcc_A8e-28136200468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0840561e-121BT084056.1 Zea mays full-length cDNA clone ZM_BFb0069B11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828794.10.0ethylene-responsive transcription factor ERF105-like
TrEMBLA0A2S3GS230.0A0A2S3GS23_9POAL; Uncharacterized protein
STRINGPavir.Aa01181.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-23ERF family protein