PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02753.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 660aa    MW: 70358.8 Da    PI: 5.8689
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02753.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.25.2e-2996180187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+++e+laLi++r+em+ ++r + lk+plWe+v++k++  g++rs+k+Ckek+en+ k+y+++k+ + +r++++  ++++f qlea
  Pahal.A02753.1  96 RWPREETLALIRIRTEMDADFRIAPLKAPLWEDVARKLAGLGYHRSAKKCKEKFENVDKYYRRTKDARAGRQDGR--SYRFFAQLEA 180
                     8*********************************************************************86555..5******985 PP
2trihelix108.44.8e-34410495187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k+ev++Li++r+e++e++ ++ +k+plWe++++ mr+ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf++l+a
  Pahal.A02753.1 410 RWPKEEVQVLIQLRTEKDEQYHDAGAKGPLWEDIAAGMRRIGYNRSAKRCKEKWENINKYYKKVKESNKRR-PEDSKTCPYFHHLDA 495
                     8********************************************************************97.99**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.005993155IPR001005SANT/Myb domain
PfamPF138378.3E-2095181No hitNo description
CDDcd122031.47E-2696160No hitNo description
PROSITE profilePS500906.99296153IPR017877Myb-like domain
SMARTSM007172.3E-4407469IPR001005SANT/Myb domain
SuperFamilySSF466897.26E-5408477IPR009057Homeodomain-like
CDDcd122032.34E-28409474No hitNo description
PROSITE profilePS500907.863409467IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.7E-5410466IPR009057Homeodomain-like
PfamPF138379.0E-23410496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MLHHHGGAGF PYMAPTTAGA DPFLPTPTGP ASVAAIIPPL PMELQSAAAG TARGNFEELP  60
AGGSSAAAAA SLQDDDVPAD VGAGGAGASG SGGGHRWPRE ETLALIRIRT EMDADFRIAP  120
LKAPLWEDVA RKLAGLGYHR SAKKCKEKFE NVDKYYRRTK DARAGRQDGR SYRFFAQLEA  180
LHAAAQQQRQ ATGMAAAVRG DHQPSGAMAW TAAPATVGGP PAGAGLPDLS FSSMSGSESE  240
SESDDDLDVA EAGPGNGEGG GDDREIMAIF EGMMRQVTEK QDAMQRVFLE TLERWEAERT  300
AREEAWRRQE VARMNREREQ LARERAVAAS RDAALIAFLQ RVGGGQQGEP TRLPPPIAVA  360
LPMPDRTPPS PRHDAAAQPT SLQPVPAPPK LEEARAWAGG EGSGGSMPSR WPKEEVQVLI  420
QLRTEKDEQY HDAGAKGPLW EDIAAGMRRI GYNRSAKRCK EKWENINKYY KKVKESNKRR  480
PEDSKTCPYF HHLDAMYRKK RFAAGGSSTA PGAYTAAGAG AGAVTSQGNP NQRELEGKSS  540
NDADGLRNDG QGNVHAPPRP GNGETAPATT ENKRAEDAVK GTNQLLQQFG ADETESDDND  600
MGGDYTEESN DEDKMKYKTA FQNPNVIGSS GNDAPAPPAT AAAPTSSAAP TRSSFLAVQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798824.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A2S3GRW10.0A0A2S3GRW1_9POAL; Uncharacterized protein
STRINGSi016578m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-57Trihelix family protein