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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.A02725.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 294aa MW: 31791.9 Da PI: 8.4882 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.A02725.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.8 | 5.3e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+llvd+++ G g+W++ ++ g++R++k+c++rw +yl
Pahal.A02725.1 15 KGPWTPEEDKLLVDYIQANGHGSWRLLPKLAGLNRCGKSCRLRWTNYL 62
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++++eE++ +v++++ G++ W+ Ia+ ++ gRt++++k++w+++l
Pahal.A02725.1 68 RGPFSPEEQKSIVQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 113
89********************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MGRAPCCDRT KGLKKGPWTP EEDKLLVDYI QANGHGSWRL LPKLAGLNRC GKSCRLRWTN 60
YLRPDIKRGP FSPEEQKSIV QLHAIVGNKW SMIAAQLPGR TDNEIKNYWN THLKKQLRRM 120
GLAEPPPGPA AGCPAARHMA QWETARLEAE ARLSLLASSS SGATGTTAAT TTISASSSST 180
FAAAGEKAAS KPADIFLRLW SSDIGDSFRR RAAAPAPVRR NDVVIIKQEA QAPPGPGDDS 240
SAASNETEAL EEYQMFLDFA GEELGLFHGR HGGFSLFPPH DDVLAEASLD TAF*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT038693 | 0.0 | BT038693.1 Zea mays full-length cDNA clone ZM_BFb0309J21 mRNA, complete cds. |
| GenBank | KJ727528 | 0.0 | KJ727528.1 Zea mays clone pUT5388 MYB transcription factor (MYB103) mRNA, partial cds. |
