PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02618.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 691aa    MW: 73819.4 Da    PI: 7.7758
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02618.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23119220199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +
  Pahal.A02618.1 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGVAWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RGD 209
                     89*****************************96555555..8************************************************..348 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  Pahal.A02618.1 210 GGDLHVGIRRA 220
                     8999*****97 PP
2Auxin_resp116.91.7e-38271354183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ as +++FevvY+Prast+eF+v+++ v++a++v++s+GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  Pahal.A02618.1 271 AARLASGGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWSPGMRFKMAFETEDSSRISWfMGTVAGVQVADPIRWPQSPWRLLQ 354
                     6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-37113222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-29114221IPR015300DNA-binding pseudobarrel domain
CDDcd100178.00E-22118219No hitNo description
PROSITE profilePS5086312.703119221IPR003340B3 DNA binding domain
PfamPF023621.3E-21119220IPR003340B3 DNA binding domain
SMARTSM010191.1E-20119221IPR003340B3 DNA binding domain
PfamPF065073.0E-33271354IPR010525Auxin response factor
PROSITE profilePS5174515.26604684IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MITFADLTEP AAERGVDRQL WLACAGGMCT VPPVGAGVYY FPQGHAEHAR GLAGAADLSA  60
ARVPALVPCR VAAVRYMADP DTDEVFARIR LAPLRAGEAD AGPDDDAATD GEREKPASFA  120
KTLTQSDANN GGGFSVPRYC AETIFPRLDY AADPPVQTVV AKDVHGVAWK FRHIYRGTPR  180
RHLLTTGWST FVNQKKLVAG DSIVFLRGDG GDLHVGIRRA KRGFCGAGGG GGEEAPLPGW  240
DHYAGMVRGN VSPCGAAKAQ GKVRPEDVAE AARLASGGQP FEVVYYPRAS TPEFCVRAAA  300
VRAAMRVQWS PGMRFKMAFE TEDSSRISWF MGTVAGVQVA DPIRWPQSPW RLLQVTWDEP  360
DLLQNVKRVS PWLVELVSSI PAIHLSSFSP PPKRPRIRAY PEFPFEGQLL NPAFPPNPLP  420
HGHHYLHTHP SFFPFPDGSA PAAIQGARHA QFVPPLSDLH LTHLQSSLLY PGLRRPDHVG  480
PATPLPARIS TDLTIGAVPA RDDVSCALSM GASNNKKPGA AKPAGLVLFG RTILTEQQMS  540
LSGSGGATSP AATGNSWNAE KGPNVSEGSG SGSGVTQNSP TKNCSSSERL PWYRYASEVA  600
GLEPGQCKVF VESDTVGRNL DLSALGSFEE LHGRLSEMFC IESAELRSRV LYRGAAGDVK  660
HAGDEPFSVF VKSARRLTIL TDAGSDNLGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-811637551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432300.0AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793426.10.0auxin response factor 8-like
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A2S3GR600.0A0A2S3GR60_9POAL; Auxin response factor
STRINGSi016509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16