PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.A02488.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

CO-like

Protein Properties

Length: 334aa MW: 34923.9 Da PI: 4.9265

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02488.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.5	1.1e-07	22	59	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 r C+ + ++++l+C+ ++ +lC+ C H g H Pahal.A02488.1 22 RPCDACAAEPARLHCRADGAFLCPGCDARAH-GagsrHA 59 68**************************999.4466675 PP
2	zf-B_box	22.9	1.7e-07	61	105	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 + C+ +e+ ++ C+ + lC+ C +H+ H++ p Pahal.A02488.1 61 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 105 679*****************************6688888898877 PP
3	CCT	70.3	5e-24	252	294	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k+ Pahal.A02488.1 252 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKR 294 9****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	3.0E-5	19	63	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.769	19	63	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.2E-6	22	59	IPR000315	B-box-type zinc finger
CDD	cd00021	8.94E-7	22	63	No hit	No description
PROSITE profile	PS50119	10.424	59	106	IPR000315	B-box-type zinc finger
Pfam	PF00643	7.9E-6	61	106	IPR000315	B-box-type zinc finger
SMART	SM00336	4.6E-9	64	106	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.916	252	294	IPR010402	CCT domain
Pfam	PF06203	3.0E-18	252	294	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MDAAAELEQK PAVGYWAVAG ARPCDACAAE PARLHCRADG AFLCPGCDAR AHGAGSRHAR 60 VWLCEVCEHA PAAVTCRADA AALCAACDAD IHSANPLARR HERLPVAPFF GALADAPQPF 120 PSPAFAAAGA QSQGDAAADD DGSNEAEAAS WLLPEPDNSH EDSAAATDAF FADSDAYLGV 180 DLDFARSMDG IKAIGVPVAP PELDIASSGF YYPEHCMNHS VSSSEVAVVP DALAGGVPAA 240 PAAPVASRGK EREARLMRYR EKRKNRRFDK TIRYASRKAY AETRPRIKGR FAKRCSAEAE 300 GEDDALLEHE EGACFSPAVS APAASDGVVP SFC*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811633.1	0.0	zinc finger protein CONSTANS-LIKE 3-like
TrEMBL	A0A2S3GR84	0.0	A0A2S3GR84_9POAL; Uncharacterized protein
STRING	Sb04g025660.1	1e-174	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.1	1e-19	CONSTANS-like 3

Link Out ? help Back to Top
Phytozome	Pahal.A02488.1