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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02432.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 23270 Da PI: 9.2048 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 7.1e-13 | 156 | 201 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Ave+Ik Lq Pahal.A02432.2 156 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 201 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.723 | 150 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-16 | 153 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.38E-13 | 154 | 205 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.0E-15 | 155 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-10 | 156 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-13 | 156 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MNYAGYPSSK AGGSGGGAEA HHPSTASGSG GRKMKPSQLN FTRPPQQDGG AAGGHLSQIS 60 EDGAFPAGLV GADRGGASSG GGAARSFSGG FSIVGPWEES RDVIATLGAY DSQYSGAMAG 120 TALEMAAGMD RYMQLQQDQV PFKVRAKRGC ATHPRSIAER ERRTRISEKL RKLQELVPNM 180 DKQTSTADML DLAVEHIKGL QSELQALKHE QEKCTCCRKR * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954725 | 1e-111 | EU954725.1 Zea mays clone 1479278 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808991.1 | 1e-156 | transcription factor bHLH128-like | ||||
Swissprot | Q8H102 | 5e-47 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A2S3GR30 | 1e-160 | A0A2S3GR30_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa01423.1.p | 1e-135 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 4e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02432.2 |
Publications ? help Back to Top | |||
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