PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02372.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 350aa    MW: 39053.5 Da    PI: 4.6691
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02372.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.24.2e-2961501128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 
                     lp+G++F+P+d el+ e+L++k+          +  +e+i+++d    i++++P++Lp  +k++ ++ +fF++ +k+y+ gkrk+r         
  Pahal.A02372.2   6 LPAGVKFDPSDLELL-EHLEEKIGLGGskphvlI--DEFIPTIDndegICYSHPENLP-GMKTDGSNAHFFHRLSKSYNCGKRKRRRviscsdnt 96 
                     799************.99****876654566442..333444433445**********.7788899*******************9668999988 PP

             NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                        ++ +W++tg++k++++ +g ++g k+++v+yk   r  k+ +++Wvmh+y+l
  Pahal.A02372.2  97 vtDDHVRWHKTGRSKPIYD-NGVKKGWKEIMVLYKSsqRGGKPDRAHWVMHQYHL 150
                     7434889************.999***********7611555666*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-332169IPR003441NAC domain
PROSITE profilePS5100528.7256169IPR003441NAC domain
PfamPF023651.8E-117150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLWPGLPAGV KFDPSDLELL EHLEEKIGLG GSKPHVLIDE FIPTIDNDEG ICYSHPENLP  60
GMKTDGSNAH FFHRLSKSYN CGKRKRRRVI SCSDNTVTDD HVRWHKTGRS KPIYDNGVKK  120
GWKEIMVLYK SSQRGGKPDR AHWVMHQYHL GEEEDEKDGD LVVSKIFYQM PNKSTEVSGT  180
ETAYDEPDAS ASVIGPKTPK TNTPQPRHPN NSPCETEKNA FILQDQLLLQ DEGEPTISIV  240
SLEDDAVNPA WCAGAEEQQA VGGASRAQLN PDEPLLCRED PNSLNDEALF PLDYPILSQC  300
RNEILDRNQN TFYGLPDLHN VDLGTPPDLQ LGDLQFGSQE SLGSWLDRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287KRKRRR
28387RKRRR
38488KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818203.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1
RefseqXP_025818210.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X2
TrEMBLA0A2S3GQL10.0A0A2S3GQL1_9POAL; Uncharacterized protein
TrEMBLA0A2T8KWP30.0A0A2T8KWP3_9POAL; Uncharacterized protein
STRINGPavir.Aa01341.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.13e-65NAC domain containing protein 85