PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 365aa MW: 39246.5 Da PI: 7.6785 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.9 | 2.3e-54 | 22 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++k+++ ++ +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++ Pahal.A02270.1 22 LPPGFRFHPTDEELITHYLARKAADPRFAP-RAVGEADLNKCEPWDLPARATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFR- 114 79*************************888.88***************998999****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkg kt Wvmheyrl Pahal.A02270.1 115 GKALVGMKKTLVFYTGRAPKGGKTGWVMHEYRL 147 99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-65 | 17 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.955 | 22 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-29 | 23 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MEHDVHHHQQ QQRRRRQEGM ELPPGFRFHP TDEELITHYL ARKAADPRFA PRAVGEADLN 60 KCEPWDLPAR ATMGEKEWYF FCVKDRKYPT GLRTNRATES GYWKATGKDR EIFRGKALVG 120 MKKTLVFYTG RAPKGGKTGW VMHEYRLDGK HAAAGSSSSL VPSIRAAASK DEWVLCRVFK 180 KSIEPPVVAG GKRSSGACME VVDVVGPSMS MADDLAACAL PPLMDVSGGS AAAMSLSAAA 240 AAIELPPPPH HVTCFSNALE GQFLNPPFLL PSAGPAAADH LAMAASASPF LASMVPTQYD 300 GAAGVGGTVH ELLQEGGGWY GKLGERERLS GGASQDTGLT SEVNPAEISS RQHMDHHAAS 360 LWGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-56 | 20 | 181 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-56 | 20 | 181 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-56 | 20 | 181 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-56 | 20 | 181 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-56 | 20 | 182 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-56 | 20 | 182 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-56 | 20 | 182 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-56 | 20 | 182 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-56 | 20 | 182 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-56 | 20 | 182 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-56 | 20 | 182 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-56 | 20 | 182 | 18 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-56 | 20 | 181 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-56 | 20 | 181 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065898 | 0.0 | BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds. | |||
GenBank | KJ728021 | 0.0 | KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796322.1 | 0.0 | NAC domain-containing protein 92-like | ||||
TrEMBL | A0A2S3GQ97 | 0.0 | A0A2S3GQ97_9POAL; Uncharacterized protein | ||||
STRING | Si017567m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2730 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 3e-85 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02270.1 |