 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.A02194.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 326aa MW: 35498.5 Da PI: 5.8679 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.A02194.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57 | 3.3e-18 | 156 | 210 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++++eq Le+ F+++++++ +++ +LAk+l+L rqV vWFqNrRa+ k
Pahal.A02194.1 156 RKKLRLSQEQSAFLEDSFKEHSTLTPKHKSDLAKRLNLRPRQVEVWFQNRRARTK 210
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 122.5 | 2.1e-39 | 156 | 245 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rls+eq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr +l
Pahal.A02194.1 156 RKKLRLSQEQSAFLEDSFKEHSTLTPKHKSDLAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRRCETLAQENRRLHREVAELR-AL 245
69*************************************************************************************9.55 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MELELSLGDS PAPAKGTSTP VLTPTCAGKE DHDELVLELG VGSAKRTEQD SQKTPTQREE 60
DAQDQEEDGE ACFHSESPVE LSLGCPLLPA SAETGSANSE ECRRGFEVNT VLVDGDTVQG 120
RSLSTSSLHM EVPVRQAADQ EAAEDEENSG VGGGARKKLR LSQEQSAFLE DSFKEHSTLT 180
PKHKSDLAKR LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRRCETLAQ ENRRLHREVA 240
ELRALRTAPY PFNGHLPAAG LSTARVCPSC DDDKVTARNP AITASSPAVA PPSPVSTLFA 300
RPHFRAFTVH PVLRRQPSAA TWGAG*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 204 | 212 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
