PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02148.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 187aa    MW: 19850.1 Da    PI: 5.0429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02148.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-182374156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++y+GVr++k +g+Wv+eIr p   g + r++lg+f++ae Aa a++ a+++l+g+
  Pahal.A02148.1 23 PQYRGVRRRK-WGKWVSEIRQP---GTKVRVWLGSFDSAEAAAVAHDVAALCLRGP 74
                    68*****998.**********8...325**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-122373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-292483IPR001471AP2/ERF domain
PROSITE profilePS5103223.0512482IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-202483IPR016177DNA-binding domain
SMARTSM003804.1E-352488IPR001471AP2/ERF domain
CDDcd000183.56E-172582No hitNo description
PRINTSPR003677.9E-102536IPR001471AP2/ERF domain
PRINTSPR003677.9E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MENLHHSQQQ QPAAPAASAA PAPQYRGVRR RKWGKWVSEI RQPGTKVRVW LGSFDSAEAA  60
AVAHDVAALC LRGPRDAQLN FPGSAGWLPR PASTDPADIR AAAAEAAERV RREPALVAAA  120
EPPAGRLDDL AVGGEFGDDM ESSPRLWTEM AEAMLLDPPK WGPDGSDGSE GSGSQHWPQG  180
SLWDAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-142082163ATERF1
3gcc_A1e-142082163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821753.11e-130ethylene-responsive transcription factor ERF036-like
TrEMBLA0A2S3GQ031e-128A0A2S3GQ03_9POAL; Uncharacterized protein
STRINGBRADI3G45997.13e-68(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-21ERF family protein