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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02148.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 19850.1 Da PI: 5.0429 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.7e-18 | 23 | 74 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++k +g+Wv+eIr p g + r++lg+f++ae Aa a++ a+++l+g+ Pahal.A02148.1 23 PQYRGVRRRK-WGKWVSEIRQP---GTKVRVWLGSFDSAEAAAVAHDVAALCLRGP 74 68*****998.**********8...325**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-12 | 23 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 24 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.051 | 24 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-20 | 24 | 83 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-35 | 24 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.56E-17 | 25 | 82 | No hit | No description |
PRINTS | PR00367 | 7.9E-10 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-10 | 47 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MENLHHSQQQ QPAAPAASAA PAPQYRGVRR RKWGKWVSEI RQPGTKVRVW LGSFDSAEAA 60 AVAHDVAALC LRGPRDAQLN FPGSAGWLPR PASTDPADIR AAAAEAAERV RREPALVAAA 120 EPPAGRLDDL AVGGEFGDDM ESSPRLWTEM AEAMLLDPPK WGPDGSDGSE GSGSQHWPQG 180 SLWDAC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 20 | 82 | 1 | 63 | ATERF1 |
3gcc_A | 1e-14 | 20 | 82 | 1 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821753.1 | 1e-130 | ethylene-responsive transcription factor ERF036-like | ||||
TrEMBL | A0A2S3GQ03 | 1e-128 | A0A2S3GQ03_9POAL; Uncharacterized protein | ||||
STRING | BRADI3G45997.1 | 3e-68 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02148.1 |