PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A02117.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 205aa MW: 22630.1 Da PI: 5.804

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02117.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.7	1.4e-33	7	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGf+F P+de+lvv++L++k+++ +++ ++i++v + +++Pw+L+ ++ + ++wyfFs++++ +r+ +gyW+ g d++v+s Pahal.A02117.2 7 LPPGFHFFPSDEDLVVHFLRRKAANLPCRP-DIIPTVLLQHYNPWELNGTALQAGNQWYFFSHAAQ--------SRISPNGYWNPIGADETVTS- 91 79***********************999.99**********965566789**9855........68999***********. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g vglkktL+f +g+ +kg kt+W+mhey+l Pahal.A02117.2 92 SGCIVGLKKTLIFCTGEPSKGFKTNWIMHEYHL 124 999***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.29E-45	4	167	IPR003441	NAC domain
PROSITE profile	PS51005	40.878	7	168	IPR003441	NAC domain
Pfam	PF02365	1.2E-20	8	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MGGATDLPPG FHFFPSDEDL VVHFLRRKAA NLPCRPDIIP TVLLQHYNPW ELNGTALQAG 60 NQWYFFSHAA QSRISPNGYW NPIGADETVT SSGCIVGLKK TLIFCTGEPS KGFKTNWIMH 120 EYHLQDGGYN VSGSSTSSSS SSSRKSQRKR VHSSTESNNW VICRVFESSC GSQVSFHDEG 180 TELSCLDEVF LSLDDYDEVS LPNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-34	7	173	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-34	7	173	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-34	7	173	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-34	7	173	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-34	7	173	20	173	NAC domain-containing protein 19
3swm_B	2e-34	7	173	20	173	NAC domain-containing protein 19
3swm_C	2e-34	7	173	20	173	NAC domain-containing protein 19
3swm_D	2e-34	7	173	20	173	NAC domain-containing protein 19
3swp_A	2e-34	7	173	20	173	NAC domain-containing protein 19
3swp_B	2e-34	7	173	20	173	NAC domain-containing protein 19
3swp_C	2e-34	7	173	20	173	NAC domain-containing protein 19
3swp_D	2e-34	7	173	20	173	NAC domain-containing protein 19
4dul_A	2e-34	7	173	17	170	NAC domain-containing protein 19
4dul_B	2e-34	7	173	17	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827936.1	1e-152	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	8e-61	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2S3GPW1	1e-151	A0A2S3GPW1_9POAL; Uncharacterized protein
TrEMBL	A0A2T7F7M2	1e-151	A0A2T7F7M2_9POAL; Uncharacterized protein
STRING	Pavir.Aa01694.1.p	1e-140	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	4e-61	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Pahal.A02117.2

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]