PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02070.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 328aa    MW: 34015.6 Da    PI: 8.5242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-10114162355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +ah + Er RR+r+++ f++L  l+P+ +     +K++Ka+ + +++++I+ L+
  Pahal.A02070.1 114 KAHIITERERRKRMKDLFSNLHALMPHvP-----EKVDKATLVGETIHFIRALE 162
                     68*************************77.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-13111175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.287111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-13114175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-10114163No hitNo description
PfamPF000103.9E-8114162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-6117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAQNGPHDHQ AAAASDERIF TPPTTMTFLG PAENRNGGSR IGSPVGMDAS KGKDVVLPNA  60
VQGGEHGSAG GGEANADKSK GKHPAVGDAA TAAAGDGFPK GKGSLAADDG GDTKAHIITE  120
RERRKRMKDL FSNLHALMPH VPEKVDKATL VGETIHFIRA LEQTKAQLER RKQEQALARQ  180
AAAEAVVSAL LSAPQTAQGM AAMSNGWGPA VPHHQQPLAA AAAPPSLATA TGPAGFQTWS  240
APNVVLSVSN EKAIINVCLP RQPRMLTLVM SVLSKHAIDV ITAHVAADGP RSLITIYTRV  300
NVAGGESPSA EDIYKLAVSE IMVWLTS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821631.10.0transcription factor bHLH95-like
TrEMBLA0A2S3GPS10.0A0A2S3GPS1_9POAL; Uncharacterized protein
STRINGSi017798m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-16bHLH family protein