PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02069.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 327aa    MW: 33950.9 Da    PI: 4.9315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02069.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11116163455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er RR+r+++ f++L el+P+     s K++Ka+ + +++++Ik L+
  Pahal.A02069.1 116 VHIIMERERRRRMKDMFNTLHELMPHV----SNKVDKATLVGETINFIKTLE 163
                     599***********************7....79****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.211112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-13115175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12116176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9116163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-9118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.369253326IPR002912ACT domain
Gene3DG3DSA:3.30.70.2604.2E-4254307No hitNo description
CDDcd021162.31E-4254303No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTQDGPHDHQ DTASSDERSF VPPTTMTFLG PAENDDNRGS RTGSPVGMDA GKGKDAVPNA  60
IQGGDGSASG GKANSGTSEG KDLATGAAAA DAAGDGSTSN KGKSPLAADD NGELKVHIIM  120
ERERRRRMKD MFNTLHELMP HVSNKVDKAT LVGETINFIK TLEETKAQLE KKKLEQALAR  180
QATAEAAAAG ASSFSVPCTA HGMAALSDGW DPVPPQQPAA PAAAPLAAAA GPVGFQTWST  240
PNVVLSVLND EAIINVCAPR QRGMLTMVVS VLSKHGIDVI SIQIGADDVQ SFFTIYTRVN  300
GAGGENLSAE DVYKLAVSEI MVWISN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821619.10.0transcription factor bHLH95-like
TrEMBLA0A2S3GPW20.0A0A2S3GPW2_9POAL; Uncharacterized protein
STRINGPavir.Aa01764.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-19bHLH family protein