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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A02066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 25765.1 Da PI: 10.8047 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.4e-20 | 126 | 174 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f t+e+Aa+a++ a+++l+g Pahal.A02066.1 126 YRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFATPEDAARAYDGAALRLHG 174 9*******.**********94....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-32 | 125 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 125 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.935 | 125 | 182 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-37 | 125 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 126 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-22 | 126 | 183 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.71E-24 | 133 | 184 | No hit | No description |
PRINTS | PR00367 | 3.7E-11 | 148 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MRPPPSSPAP ASLLEAAEEA IIVAALTHVL ANGRGATLTP HAPSPVVPPC PWTATGCHRG 60 HVGQAACRGE PSPSAHIVSA RDRSACEQGL MAASATHELA PMASAWPQEA QRGAAAAAAS 120 SRRRSYRGVR RRPWGKWAAE IRDPKKAARV WLGTFATPED AARAYDGAAL RLHGSRAKLN 180 FPEDASSLRH PPAPVGSRQP GSGWDRTLDR SACPEMVKRR DNGRFLGYWS IGTWSPSPKP 240 TC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-23 | 124 | 187 | 4 | 68 | ATERF1 |
3gcc_A | 9e-23 | 124 | 187 | 4 | 68 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091407 | 1e-47 | FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821598.1 | 1e-125 | ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A3L6QL76 | 1e-119 | A0A3L6QL76_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Aa01729.1.p | 3e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15038 | 11 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 3e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A02066.1 |