PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A02059.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 521aa MW: 58230 Da PI: 7.7625

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02059.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.2	7.9e-22	206	302	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 +Wt ++v++L+ a+ +++e++ ++ ++k++W+ vs++m ergf++sp+qC++k+++lnkryk+++e+ +++t +e +++ +++ Pahal.A02059.1 206 KWTSDMVKLLVSAVAYIDEDIDTDHgtssgrkkhamlKRKGKWRLVSSVMTERGFSVSPQQCEDKFNDLNKRYKRLTEILGRGTaCEIVEKPALL 300 7****************99997666678888999899*****************************************9548888887777 PP trihelix 83 dq 84 +q Pahal.A02059.1 301 EQ 302 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-19	204	329	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MRLSAPLFFP PRLAAAIPRP ICSSSPERPR VCTPFHCGDC WESPRRRLAA AAVRALQTPA 60 ASFGYFRLPA PQIPLQTLHR PRKGGGFSPA GSHLLTSLAF LVFGWNRELC AQAGAGGLSS 120 EMEGNLPPRA LIPGGAPFDL GQPFHFADQP QVVQVHQGAF AAPAANQMQG FGSAVKPSLS 180 SEEDADDGHH GRGKAAAPTS QWHRVKWTSD MVKLLVSAVA YIDEDIDTDH GTSSGRKKHA 240 MLKRKGKWRL VSSVMTERGF SVSPQQCEDK FNDLNKRYKR LTEILGRGTA CEIVEKPALL 300 EQVSLSAKLK EEAKKHLSSK HLHYEEMCSY HNHNRHCLLD DPSLQRSLRV ALRSPGEQGK 360 KCSFGYDDED DQMFLSDEDD EDDGFNDDLE FSAEDHRHHR VHGSKKLKHD HEGGCCGSHL 420 SEVAAIDMNQ MFSEGTGGSA QKNPSGMNAV QIERQRLKIK EDMLKLEQSR LKWLRSCKEK 480 DRELEKMKLE NERMELENER LELELKLKEI EMGIKPKRIY *

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MRLSAPLFFP PRLAAAIPRP ICSSSPERPR VCTPFHCGDC WESPRRRLAA AAVRALQTPA  60
ASFGYFRLPA PQIPLQTLHR PRKGGGFSPA GSHLLTSLAF LVFGWNRELC AQAGAGGLSS  120
EMEGNLPPRA LIPGGAPFDL GQPFHFADQP QVVQVHQGAF AAPAANQMQG FGSAVKPSLS  180
SEEDADDGHH GRGKAAAPTS QWHRVKWTSD MVKLLVSAVA YIDEDIDTDH GTSSGRKKHA  240
MLKRKGKWRL VSSVMTERGF SVSPQQCEDK FNDLNKRYKR LTEILGRGTA CEIVEKPALL  300
EQVSLSAKLK EEAKKHLSSK HLHYEEMCSY HNHNRHCLLD DPSLQRSLRV ALRSPGEQGK  360
KCSFGYDDED DQMFLSDEDD EDDGFNDDLE FSAEDHRHHR VHGSKKLKHD HEGGCCGSHL  420
SEVAAIDMNQ MFSEGTGGSA QKNPSGMNAV QIERQRLKIK EDMLKLEQSR LKWLRSCKEK  480
DRELEKMKLE NERMELENER LELELKLKEI EMGIKPKRIY *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806041.1	0.0	uncharacterized protein LOC112884725
TrEMBL	A0A2T8KWD6	0.0	A0A2T8KWD6_9POAL; Uncharacterized protein
STRING	Pavir.Ab01884.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-64	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pahal.A02059.1