PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A02033.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 321aa MW: 34778.9 Da PI: 6.5123

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02033.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.7	1.1e-07	187	236	14	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R + +rsR RK+++i+eLe+ v++L++ +L+ ++ +l ++ +l +e+ Pahal.A02033.1 187 RRSGQRSRVRKLQYIAELERTVDSLQNMGADLAVRVASLFQLHNSLSMEN 236 67889******************************999999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	5.09E-17	186	230	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-5	187	245	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MSRSPHLPPR CPPLGPQITR RDDSLFTQSC RFPSGDPFFG EPPCWLDDLL ADSGKVPNLP 60 PLRRACSDSD AILDALSTFQ SPIHPIEEGD LSPGGEAEDL LDAVEGGESG SVVEASCVYG 120 PNSPRQKSRL TTSESSMVNA VLENVPSNPL QYLTIDASSG VNGNVANGTA DATDAFGHPD 180 QDKTFKRRSG QRSRVRKLQY IAELERTVDS LQNMGADLAV RVASLFQLHN SLSMENKQLR 240 IQISTLQHAK LIKEGQTQAL KNEAERLKQM SGRHRRSRSV TSCYNPSPYG DASAVNWQMP 300 DMTKLSLNGS SVSPRGGYGL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	192	RRSGQRS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055788	0.0	BT055788.1 Zea mays full-length cDNA clone ZM_BFb0187P01 mRNA, complete cds.
GenBank	BT068415	0.0	BT068415.1 Zea mays full-length cDNA clone ZM_BFb0176P14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815126.1	0.0	basic leucine zipper 2
TrEMBL	A0A2S3GPT3	0.0	A0A2S3GPT3_9POAL; Uncharacterized protein
TrEMBL	A0A2T7F7D5	0.0	A0A2T7F7D5_9POAL; Uncharacterized protein
STRING	Pavir.Aa01750.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8137	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	2e-16	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.A02033.1