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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.A01919.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 376aa MW: 39103.2 Da PI: 7.4176 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.A01919.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 60.1 | 5.3e-19 | 201 | 250 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a++ a+++++g
Pahal.A01919.1 201 HYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTFDTAEAAAAAYDDAALRFKG 250
7********.**********83....36************************988 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MIQAASQVVL DVEETRPCAV NGDEGARSGV LPDGEETIQA ASQRSKVEHR RHGVKRPLPE 60 PDDEEAQPAA SLSPASVPTI SLERHFPRRR QQQIVLGRGG GAGVGHDGCW SAPAPAPYHV 120 QTHQQQGAYY STIAYDDVGA GSSTTSSHQA GHLAAAAVPP APAGSHQQAT PEAGTAAAAA 180 AAAGGQAVEV QEEEGNVTRR HYRGVRRRPW GKWAAEIRDP AKAARVWLGT FDTAEAAAAA 240 YDDAALRFKG AKAKLNFPER VRGRTGQGAF LVSPGVPQQP PPSSLPTAAA PFPGLMRYAQ 300 LLQGWNSGNN AASSAGGLAL PALAMPPAQA SSSVQILDFS TQQLVRGSPT TSASMSRTSR 360 VDEAHEAHQS CNAPD*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005749 | 9e-87 | AP005749.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17. |
GenBank | AP005842 | 9e-87 | AP005842.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22. |
GenBank | AP014958 | 9e-87 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
GenBank | CP012610 | 9e-87 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
GenBank | CT831330 | 9e-87 | CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence. |