PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01885.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 442aa    MW: 46883.7 Da    PI: 4.9427
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01885.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.4e-151152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i n + r  tf kR++g+ KKA ELSvLC+++va+++++ +g
  Pahal.A01885.1 11 IPNRRVRAGTFGKRKEGLKKKAGELSVLCGIDVALVVAAGDG 52
                    668899999****************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.39152IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-19173IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-16161IPR002100Transcription factor, MADS-box
CDDcd002661.90E-17245No hitNo description
PRINTSPR004044.7E-8323IPR002100Transcription factor, MADS-box
PfamPF003199.8E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGRRKVSMGL IPNRRVRAGT FGKRKEGLKK KAGELSVLCG IDVALVVAAG DGGAAADVWE  60
SREGVLARYR ALGAEVRARH THRAYLDAEL GKGEAKLARV RQGGPDALAR WDRALDGVAT  120
EEEARRLLDA VDAAMRAAED RRRALGLPPV DDAEDGVVLD EVAPLNFACA GDDDYLLHAP  180
GSDANNDQQA MWGSHDFQFQ QGGAADMQHT GYGFQQYTSG AGMEGYHLQM GPDMYSSGDN  240
NNGHLADAYQ QYQPRDTMRQ HGYGFQCAHA SYFDVPSGYA QPSLPTWSAD EPRHAMLPLE  300
YLSADAGLNY ADTPASQGVG GSSFTMGAAS GNFFHSPPAL SLAMGTASGG GDGDGDFINN  360
APLAAVPSYT MGGSGDNFTN AMTAQPVAMS YGGDLTIAGR YAAQWQAPPH PQRAGGDQRP  420
SIEQLHYLSD LEDTQLHLSG N*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815545.10.0developmental protein SEPALLATA 3-like
TrEMBLA0A2S3HVK90.0A0A2S3HVK9_9POAL; Uncharacterized protein
STRINGPavir.Eb02360.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.32e-09M-type_MADS family protein