PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01588.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 372aa    MW: 39867.1 Da    PI: 4.2838
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01588.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.11e-20111421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgk.dke 91 
                     +pp frF+Pt+ elv +yL ++++g++     +i++    ++ PwdL  ++  ++e+e yf +++ ++ + g r+ r  +   g Wk + + dk 
  Pahal.A01588.1  11 VPPTFRFRPTQRELVEFYLLPRARGQDPFPGVIIEDDAAGSSLPWDLFeRHGLGSEDEAYFLARAGEAWKPGARQDRGCDggVGAWKMQSSvDKG 105
                     5999*********************99444255888888999*****723333466799******************65523677**88773666 PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + + +++    +  L ++ g+ ++g +  Wvmhey++
  Pahal.A01588.1 106 LRVGGERILCRRSNLSLHMGKGKSGGSVGWVMHEYTV 142
                     66645555666778*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-2610158IPR003441NAC domain
PROSITE profilePS5100529.64311159IPR003441NAC domain
PfamPF023656.6E-1412141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAAAAEIPDR VPPTFRFRPT QRELVEFYLL PRARGQDPFP GVIIEDDAAG SSLPWDLFER  60
HGLGSEDEAY FLARAGEAWK PGARQDRGCD GGVGAWKMQS SVDKGLRVGG ERILCRRSNL  120
SLHMGKGKSG GSVGWVMHEY TVAAPPCPSP VKICHIAFTG HGRKRKRVPD GQEDCLGEHT  180
SRRARVDAAA AGGCSSGEML DPDSGAVVHA SADEERSQLV LTDDDIFPQS PLLGSSDFLG  240
IPSAASTNAE QYQELEQQVP STEEEEQVMM PQLMVQQSGM AEQLSAGELE FWSSIGVDVQ  300
SSNCAEQEFW SSNGVDSNSV VPGIGDMAGD QQDQQDFWGS FTADVQSNCT VPDMAAGAFG  360
GDPWGGYCIT C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-1251429140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952258.11e-150uncharacterized protein LOC101779761
TrEMBLA0A2S3GNV10.0A0A2S3GNV1_9POAL; Uncharacterized protein
STRINGPavir.Bb01144.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1787534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.13e-11NAC domain containing protein 70