PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01585.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 453aa    MW: 48863.3 Da    PI: 4.1173
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01585.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.53.2e-20111481128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     lppG+ F+P d+elv ++L + v+g++  ++   vi++    ++ Pw+L  ++  a+++e yfF++++ ++++  r+ r  + g      ++++v
  Pahal.A01585.1  11 LPPGLNFRPDDDELVEFFLLPTVRGEPawFPGVIVIDDDSAANTLPWKLLeRHGLADDDEAYFFVRTKDAKQEAARQDRYCAGGASARWVSQRPV 105
                     79*************************8866667899*9**********7344445778********************8887877777788889 PP

             NAM  93 lsk...kgel.vglkktLvfykgrapkge...ktdWvmheyrl 128
                     +s+   +ge+  + +  L +  gr ++g    +t Wvmhey+l
  Pahal.A01585.1 106 FSAsciGGETiEWRRINLNLQMGRGKSGGgsgSTGWVMHEYTL 148
                     888888555515556679999887777654569********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-254163IPR003441NAC domain
PROSITE profilePS5100525.12411164IPR003441NAC domain
PfamPF023651.2E-1112148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSTKAAVALG LPPGLNFRPD DDELVEFFLL PTVRGEPAWF PGVIVIDDDS AANTLPWKLL  60
ERHGLADDDE AYFFVRTKDA KQEAARQDRY CAGGASARWV SQRPVFSASC IGGETIEWRR  120
INLNLQMGRG KSGGGSGSTG WVMHEYTLTE PACPSLKICH VSFSGHGKDR KRVPDEEYSN  180
GCHAAEPAPK RARVDADAAA ANSGSSTCVY GSTEPAIDQG YGAEHGSGDV FLQRTGEPCV  240
PDAHNDCQGG DPSVAHASAG QQEHSPSPFL IDQGISATDQ QQQLLPDDNN AANDSSSATT  300
CAYDYEPMQT TDEEIMEWGS LLADDAEPTA EQQKTEEHAM TPQLMIQETV AAGAAESSDG  360
ISPSNQQQQQ LDSVPSMEVE ERQEIQEDQL QLVQSSSTGP LAESAGAELY LEQGVPTTEQ  420
HLPAEYQNGG DDRQEQREFW RSLGVDIEKI VC*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T8KV330.0A0A2T8KV33_9POAL; Uncharacterized protein
STRINGPavir.Ia01183.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.23e-09NAC domain containing protein 52