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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A01340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HB-other | ||||||||
Protein Properties | Length: 1164aa MW: 130480 Da PI: 6.9143 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.6 | 5.2e-14 | 20 | 72 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ +++q++ Le+++ +yp+ ee+ + A+ +gLt +qV++WF+ rR ke++ Pahal.A01340.1 20 TKKSPQQIQMLEKFYSDVQYPKPEEMGQYATCVGLTYNQVRIWFKERRRKERR 72 66799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-14 | 12 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.722 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-14 | 15 | 77 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.34E-13 | 16 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.28E-7 | 20 | 63 | No hit | No description |
Pfam | PF00046 | 2.6E-11 | 20 | 72 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 9.779 | 381 | 440 | IPR018501 | DDT domain |
SMART | SM00571 | 4.5E-4 | 381 | 440 | IPR018501 | DDT domain |
Pfam | PF02791 | 2.1E-7 | 383 | 435 | IPR018501 | DDT domain |
Pfam | PF15612 | 2.9E-5 | 663 | 691 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 2.9E-11 | 783 | 854 | IPR028941 | WHIM2 domain |
Gene3D | G3DSA:3.90.10.10 | 6.3E-4 | 958 | 1003 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1164 aa Download sequence Send to blast |
MPPAQMMTNS LGAKRENAGT KKSPQQIQML EKFYSDVQYP KPEEMGQYAT CVGLTYNQVR 60 IWFKERRRKE RREMEAIGSH MERQLSARSS GPRSSSSSSS CDQDPMYGTS CSRPEFGSRS 120 TSIVGEESTV RSQILFPKDY ILRKIFRKDG PPLGSEFDPL PQSERDRIRD TTCHHSSQNQ 180 RSVKKRKIME STSQRSDGPY EDTVPVRKHG IGKGLMTVWH AMYSHNVECQ SGPNFIDETG 240 CLRSLRPFDD CDGLEDNGKT TQNQGMVQKK VDKRSKPPAN RRKVPCKRVT SPKEHPPMDC 300 HLSVDKSEFS ELLTEQVTLV DDEELELSEL QAGPNPLRCS AHLTSSGRHG CPLCKDLLAK 360 FPPQSVKMKQ PFSAKPWDSS PEMVKKLFQV VRFVYTHFGS VDVHPFTFDE FAQAFHDKDS 420 LLLGEVHIGL LKLLLLNAEI GSGGVFAPRS SKDCRFLSFL NFVREQEFDV NFWIRSLNSL 480 TWVEILRQVL VASGFGSKQH MLNRDFFNKE KNQMVKYGLR PRTLKGELFA LLSKAGSGGL 540 KVSVLAKSSE IVDLNISVTL ELEQLICLTL SSDITLFEKI APSAYRLRVD PQIKGKEDAK 600 SDSEDSGSVD DDEDASSSDD ESSGSQKMKL LEHDNRIAPR KKQKNAIGSP NKCSEIDESY 660 PGERWLLGLM EGEYSDLSID EKLDCLVALI DIVSGAGSVP RLEEPQRVSH NMSRAQPHQS 720 GGKIKKSTKN LYQSSDESLN GPGNLYSLDC SQQGRSSSRR NQSHIIDSGR NDLSGVAHEP 780 QVVLLGSDRR YNSYWLFLGP CRADDPGHRR VYFESSEDGH WEVVDSPQEL LSLLSVLDSR 840 GTREAHLLAS MEKRQACLFE AMKKHVEGGN AVRLPASSDS FHSETSIGDG ASPKTSSASG 900 ASPVSDVENA SVPTDLEDSN LDSSSAIVIE NGRRRDERIF MWDRSQAFDK WIWTSFYSAL 960 TAVKFGKKSF KESLVRCESC HDLYWRDEKH CRICHSTFEV GFDLEERYAV HVATCREPED 1020 AHEVPNHKVL PSQLQALKAA IHAIEASIPE VAFTGSWMKS AHKLWVKRLR RTSSLPELLQ 1080 VLVDFVGAMD EDWLYKSSAS VSFSSYLDDI IVYFQSMPQT TSAVALWVVK LDALIAPYLD 1140 KAYTSRALAI KEPAQDHRLV QGS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 72 | RRRKERRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793779.1 | 0.0 | homeobox-DDT domain protein RLT3 isoform X1 | ||||
TrEMBL | A0A2S3ISD5 | 0.0 | A0A2S3ISD5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib01030.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4556 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 1e-147 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A01340.1 |