 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pahal.A01298.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
bZIP |
| Protein Properties |
Length: 383aa MW: 40938.1 Da PI: 9.8355 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.A01298.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 63.8 | 3.3e-20 | 298 | 360 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e+elk+++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++++l+se+
Pahal.A01298.1 298 ERELKKQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCDSLTSEN 360
89***********************************************************98 PP
|
| 2 | bZIP_1 | 20.7 | 8.9e-07 | 343 | 373 | 25 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 25 kaeieeLeekvkeLeaeNkaLkkeleelkke 55
k+e+++L+ek+++L++eN++L ++l+ l++e
Pahal.A01298.1 343 KEELKQLQEKCDSLTSENTSLHEKLKALEDE 373
799*************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MGKGDVATRS KSQKSSAIQN EQSTPTNPPT AYPDWSQFQA YYNAAGTAPV TPPAFFHSSV 60
APSPQGHPYM WGPQMMPPYG TPPPYAAMYA QGTPYQQAPM PPGSHPYSPY PMQSPNGTVQ 120
TPTSGAGRTE TDKSSKNKRK TPLKRSKGSL GSLDVVAAKN NKSPAKPSAS SSNEGSSQSE 180
SGSGSSSEGS SANSKSDSRV KDSSERGQGN DSRSKGTQSS AVEPTQPSSG PAVLNPMMPF 240
WPVPPPMGGP ATTLNMGVDY WGAPASVPVH GKVIAAPASA PSSNSRDIVL SDPAIQDERE 300
LKKQKRKQSN RESARRSRLR KQAEWEEVAN RADLLKQENS SLKEELKQLQ EKCDSLTSEN 360
TSLHEKLKAL EDEKSNGNWY KD*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 314 | 320 | RRSRLRK |
| 2 | 314 | 321 | RRSRLRKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT066528 | 0.0 | BT066528.1 Zea mays full-length cDNA clone ZM_BFb0014J02 mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT2G35530.1 | 1e-54 | basic region/leucine zipper transcription factor 16 |
