PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01065.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 384aa    MW: 41663.6 Da    PI: 6.0962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01065.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.51.5e-07145167123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cgk F+r  nL+ H+r H
  Pahal.A01065.1 145 HTCKVCGKGFKRDANLRMHMRGH 167
                     79*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.91E-6143170No hitNo description
Gene3DG3DSA:3.30.160.602.0E-6145170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.321145172IPR007087Zinc finger, C2H2
SMARTSM003550.0011145167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
SMARTSM0035543194227IPR015880Zinc finger, C2H2-like
SMARTSM0035527232254IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEVWNNVESS MEAHRELHDH SQAGGSDSDD PRTVLTYLTF LEQKIAHLRG IICSAPRPPR  60
QIVSAELSCI AVQLVSISNT LAAASGATAE EEAKSPPRAA TPSEGDSDSS DHDLHAEDDD  120
ERLPPAGSYE VIELDKEEIL APHVHTCKVC GKGFKRDANL RMHMRGHGEE YKTAAALAKP  180
GRDAPPLPPA RCFYSCPFVG CKRNREHKSF QPLKTAVCVK NHYRRSHCDK SYTCRRCNVK  240
RFSVLADLRT HEKHCGRDRW VCSCGTSFSR KDKLFGHVAA FDGHAPALPP EEDDAAGHSA  300
ANGLGSASDQ VLMDTEAVGR MANHKECFSG SIFDGLSCSD IKGFAMIDGQ CLDNGGGSLS  360
PMDLYSCDLD GFDLFGAPGI DDF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126111e-131CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794847.10.0zinc finger protein STOP1 homolog
SwissprotQ943I61e-104STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2S3IGE10.0A0A2S3IGE1_9POAL; Uncharacterized protein
STRINGPavir.Ia00191.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.24e-96C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]