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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A00979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 512aa MW: 56068 Da PI: 6.5283 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.9 | 1.7e-31 | 119 | 172 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Pahal.A00979.1 119 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 172 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-29 | 115 | 173 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.601 | 115 | 175 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.02E-14 | 118 | 173 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-22 | 119 | 174 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.8E-9 | 120 | 171 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MVAREEQVMR ELKDKGVLVE ILDDDEERSI DNKLLDLNEG FDAESEEGEV GDDEEDEGEE 60 GDDGGSTTDV GGSGSSSNNS STNNNSGSKK GDNKGGSKSE GSGEQRVPTV RQYNRSKLPR 120 LRWTPDLHMA FVHAVERLGG QERATPKLVL QMMNVRGLSI AHVKSHLQMY RSKKLDQDGR 180 PRGAITSVYS PMDFHFMRGD RRFHEMSFFQ RAAALSSSKP EHGSFFASRN CSAPELSRLY 240 GLLQHRPAPQ TFDFRNSRNP DWASSQREAV ISRKDVTPPS TAPHQTHPLA APAALRSERR 300 WWPFTDVGAA AATGERRVET GREVGFANSI GSSSRRPHLW AMSVSGDPRL PFRWRPGGSS 360 GRDPVGYPSN SAKITTRASD PVVIDEALDA QQLERQKHVE PTRDSATPAY EACRKRSPPV 420 EAQDGTADLQ LSLSPATVVD AKKRKTTAPS EQEIMDTSEL SISLSLSPPA AASMQKQQQE 480 KTRRSNDGTG SGEAVLGQST LDLTMSIRAL E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-18 | 120 | 174 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-18 | 120 | 174 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-18 | 120 | 174 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-18 | 120 | 174 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX540607 | 1e-61 | JX540607.1 Paspalum vaginatum clone StvCtg_09077 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824409.1 | 0.0 | uncharacterized protein LOC112899951 isoform X1 | ||||
TrEMBL | A0A2S3GN02 | 0.0 | A0A2S3GN02_9POAL; Uncharacterized protein | ||||
STRING | Si016955m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-33 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A00979.1 |