PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A00925.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 26285.5 Da PI: 4.734 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.5e-18 | 49 | 96 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ Pahal.A00925.1 49 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 96 57*****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 49 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.25E-20 | 49 | 108 | No hit | No description |
PROSITE profile | PS51032 | 23.037 | 50 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-35 | 50 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-31 | 50 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-21 | 50 | 107 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-10 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MPDGEVSSPA SSGGTSSSLP LLPVEAGARR GGGGAEKRAR DRDGGEKHPS YRGVRMRAWG 60 KWVSEIREPR KKSRIWLGTF PTPEMAARAH DAAALVVKGP AAVLNFPEMA AALPRPASAA 120 ARDVQAAAAR AAAMEPALPP DGSPPAAAAA ASLQPAPVAA AGQQQDEELE AIVERPRLDE 180 DCAELVTTTV TAFGAAPFSF QDVATPAPWC DPVWIDDCAG YAAAAHDDLF GLFGLDGGDH 240 GCWASSVGTL LWNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 45 | 108 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004857 | 2e-99 | AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06. | |||
GenBank | AP014958 | 2e-99 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY258281 | 2e-99 | AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795180.1 | 1e-180 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 3e-47 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2S3GN47 | 1e-178 | A0A2S3GN47_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab00844.1.p | 1e-104 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A00925.1 |
Publications ? help Back to Top | |||
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