PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00660.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 482aa    MW: 51544 Da    PI: 8.6197
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.64.3e-11162202343
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                     + k  rr+++NReAAr+sR+RKka+i++Le+    L++  +
  Pahal.A00660.1 162 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLEQ 202
                     67999*************************86555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-8160206No hitNo description
SMARTSM003386.4E-5160213IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.979162206IPR004827Basic-leucine zipper domain
PfamPF001701.1E-8163202IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-7164207No hitNo description
PROSITE patternPS000360167182IPR004827Basic-leucine zipper domain
PfamPF141445.4E-27248327IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MGDRTWQQPH EQASYPHAGM VQAASSSAHG GIIRKEAGGG YDMAEFDQAL FLYLNGQDQT  60
SAIIQDQPQT LNIFPSQPMH VVEPAPPKGS MLGTNNTTPN AGAGPSSKRA PPSSNNAVPP  120
AGGSKKDGKP AAVKREAGSS GGAMGSGTPS TSNQQEGPRT PDAKTLRRLA QNREAARKSR  180
LRKKAYIQNL ETSRIRLSQL EQELHRSRNQ GAVFGGGVLS GGNGGLSPEA AWFDMEHARW  240
QEEDGKMMRH LRAALEAEEH AAAPPAAEAQ LRQMVDAAAA HHGLLAELKA AVARADAFHL  300
VSGAWVSAAE RCFLWIGGFR PSELIKVAVR HAEPLTEPQA MGVCGVQQWA REAEAALDHE  360
LQAMHRSVSE AVSSDAAALL CPYSDVPGYM ATMSLAISKL ASLEAFVRQA DALRLQALHR  420
LPQILTARQS ARCFLAIADY SHRLRALSEL WHTRPRHEPP VTTAAAGSSH GPPYQSRDGL  480
L*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791986.10.0transcription factor TGAL9-like isoform X1
SwissprotQ52MZ21e-146TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A2S3GMA20.0A0A2S3GMA2_9POAL; Uncharacterized protein
STRINGPavir.J04905.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.32e-97bZIP family protein