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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pahal.A00650.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
C3H |
| Protein Properties |
Length: 296aa MW: 30712 Da PI: 10.1801 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.A00650.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21.8 | 3.4e-07 | 96 | 121 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ + Ck G++C+FaHg+
Pahal.A00650.1 96 KTRLCNKYNTAEGCKWGGKCHFAHGE 121
8***********************96 PP
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| 2 | zf-CCCH | 35 | 2.3e-11 | 261 | 285 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+ C +fa+ G C +GdrC+FaH+
Pahal.A00650.1 261 FKTKMCENFAK-GSCTFGDRCHFAHV 285
69*********.*************7 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.906 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.72 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.09E-5 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.7E-7 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.3E-13 | 91 | 126 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.28E-8 | 93 | 125 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.042 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.43 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-4 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00322 | 5.2E-10 | 164 | 234 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.634 | 165 | 229 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 2.1E-14 | 165 | 233 | IPR004088 | K Homology domain, type 1 |
| SuperFamily | SSF54791 | 3.34E-14 | 167 | 257 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 3.76E-13 | 167 | 229 | No hit | No description |
| Pfam | PF00013 | 1.6E-10 | 167 | 231 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 7.8E-16 | 258 | 292 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.849 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.2E-7 | 260 | 286 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-8 | 260 | 291 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.9E-8 | 261 | 285 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MEGGRKRGTA DGANGASAGG KRARESESFQ TGVGSKTKPC TKFFSTSGCP FGEGCHFLHC 60
FPGGYQAVSK MTNLGGPAVA PPGRMMMGGP PTPTVKTRLC NKYNTAEGCK WGGKCHFAHG 120
ERELGKPMLM DSSMHSPVGP RPTGHFAPPP MANPGMATPA SFGASATAKI SVDASLAGGI 180
IGRGGVNTKQ ISRVTGAKLA IRDHESDTSL KNIELEGTFD QIKHASAMVR ELIVNISGSA 240
PPLAKNPPRG PHRGGGTGSN FKTKMCENFA KGSCTFGDRC HFAHVENELR KPAAA*
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