 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.A00558.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 201aa MW: 21014.8 Da PI: 9.7085 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.A00558.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.4 | 0.00023 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C + F ++ L H++ H
Pahal.A00558.1 89 FACHYCRRQFYSSQALGGHQNAH 111
78******************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 201 aa
Download sequence Send
to blast |
MEAEVAKERG RTWLNLNGGG GGNGHRGHSG GGASAAPVEL NLLAGMVSTA GARPNTVRAA 60
AEMPVVVLPD VARSVAVAVA EPDEPPQLFA CHYCRRQFYS SQALGGHQNA HKRERTLARH 120
RADADQLVLA HHAHAPFAVH GAFMRRQAAA APALEWMRPP SGRPPPAAVA AGDRRLTGGY 180
VDSPGGGQEE LPKLDLTLKL *
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP004087 | 4e-41 | AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09. |
| GenBank | AP014958 | 4e-41 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 4e-41 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
| GenBank | CT835407 | 4e-41 | CT835407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122P15, full insert sequence. |
