PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Pahal.A00477.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 314aa MW: 32904.9 Da PI: 4.0791

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A00477.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.2	1.6e-11	79	160	1	70
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm............rergferspkqCkekwenlnkrykkikegekk 70 +Wt e+laL++ + +++ +r+ ++ ++W+ v++++ r+rg +r + +C+ +we l+ +y +++++e + Pahal.A00477.2 79 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaasealassgtaRRRGSKRAAAECRRRWEALAAEYGAVRRWEVR 160 5******************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.3E-6	78	168	No hit	No description
PROSITE profile	PS50090	6.586	80	148	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MDPAAADLQC VIQALPAHSK AVQPPPLVQA LPAHHSPAKT HPPPAPASSP AGPKRRPPPT 60 PPGPAPPSPR RTRSGGAPEW TPAETLALVA EVAAVDDGWS RSVSAFQKWA MVAENLAASE 120 ALASSGTARR RGSKRAAAEC RRRWEALAAE YGAVRRWEVR TGGRYWEMGA AARRKAGLPV 180 EFDLELYGAM DALIRVEEAL LAGAAGGGGG GEEVEGLVGS GAGVEVGEHD GGDDHEVGED 240 EVQEDETVEE VKEEGEAEEE GEEEEEEDDD DDDESEEHEE MQVDDGNADA SNDLGTCNSL 300 PPFACSDLAV VCL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826318.1	0.0	trihelix transcription factor ASR3 isoform X2
TrEMBL	A0A2T7F2I8	0.0	A0A2T7F2I8_9POAL; Uncharacterized protein
STRING	Pavir.J38222.1.p	1e-102	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pahal.A00477.2