PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A00477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 394aa MW: 41770.4 Da PI: 4.1469 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 35.6 | 2.4e-11 | 79 | 160 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm............rergferspkqCkekwenlnkrykkikegekk 70 +Wt e+laL++ + +++ +r+ ++ ++W+ v++++ r+rg +r + +C+ +we l+ +y +++++e + Pahal.A00477.1 79 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaasealassgtaRRRGSKRAAAECRRRWEALAAEYGAVRRWEVR 160 5******************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.6E-6 | 78 | 168 | No hit | No description |
PROSITE profile | PS50090 | 6.586 | 80 | 148 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MDPAAADLQC VIQALPAHSK AVQPPPLVQA LPAHHSPAKT HPPPAPASSP AGPKRRPPPT 60 PPGPAPPSPR RTRSGGAPEW TPAETLALVA EVAAVDDGWS RSVSAFQKWA MVAENLAASE 120 ALASSGTARR RGSKRAAAEC RRRWEALAAE YGAVRRWEVR TGGRYWEMGA AARRKAGLPV 180 EFDLELYGAM DALIRVEEAL LAGAAGGGGG GEEVEGLVGS GAGVEVGEHD GGDDHEVGED 240 EVQEDETVEE VKEEGEAEEE GEEEEEEDDD DDDESEEHEE MQVDDGNADA SNDLEGHEVG 300 TNSKPEKSQN NAWDLANKLQ ENAQHIHTIL NDETDEDAGQ NHALAGLVSP DAMATTRQKA 360 DELIKSLGGL VSYLNQFTEL VKESGFENIV GMT* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826309.1 | 0.0 | trihelix transcription factor ASR3 isoform X1 | ||||
TrEMBL | A0A2S3GM47 | 0.0 | A0A2S3GM47_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J38222.1.p | 1e-174 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6353 | 24 | 33 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A00477.1 |