PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00477.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 394aa    MW: 41770.4 Da    PI: 4.1469
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00477.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.62.4e-1179160170
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm............rergferspkqCkekwenlnkrykkikegekk 70 
                     +Wt  e+laL++ +  +++  +r+ ++ ++W+ v++++            r+rg +r + +C+ +we l+ +y +++++e +
  Pahal.A00477.1  79 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaasealassgtaRRRGSKRAAAECRRRWEALAAEYGAVRRWEVR 160
                     5******************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-678168No hitNo description
PROSITE profilePS500906.58680148IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDPAAADLQC VIQALPAHSK AVQPPPLVQA LPAHHSPAKT HPPPAPASSP AGPKRRPPPT  60
PPGPAPPSPR RTRSGGAPEW TPAETLALVA EVAAVDDGWS RSVSAFQKWA MVAENLAASE  120
ALASSGTARR RGSKRAAAEC RRRWEALAAE YGAVRRWEVR TGGRYWEMGA AARRKAGLPV  180
EFDLELYGAM DALIRVEEAL LAGAAGGGGG GEEVEGLVGS GAGVEVGEHD GGDDHEVGED  240
EVQEDETVEE VKEEGEAEEE GEEEEEEDDD DDDESEEHEE MQVDDGNADA SNDLEGHEVG  300
TNSKPEKSQN NAWDLANKLQ ENAQHIHTIL NDETDEDAGQ NHALAGLVSP DAMATTRQKA  360
DELIKSLGGL VSYLNQFTEL VKESGFENIV GMT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826309.10.0trihelix transcription factor ASR3 isoform X1
TrEMBLA0A2S3GM470.0A0A2S3GM47_9POAL; Uncharacterized protein
STRINGPavir.J38222.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433