PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00415.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 905aa    MW: 99251.4 Da    PI: 5.489
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00415.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.7e-24134235199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g+ W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  Pahal.A00415.1 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfnQQPPA--QELIAKDLHGNDWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WND 224
                     99*****************************8444443..48************************************************..777 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  Pahal.A00415.1 225 NNQLLLGIRRA 235
                     7788***9997 PP
2Auxin_resp1193.7e-39260343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Pahal.A00415.1 260 AAHAASTNSRFTIFYNPRASPCEFVIPLSKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 343
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-48119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-43125249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-21133234No hitNo description
PROSITE profilePS5086313.211134236IPR003340B3 DNA binding domain
PfamPF023622.1E-22134235IPR003340B3 DNA binding domain
SMARTSM010193.4E-24134236IPR003340B3 DNA binding domain
PfamPF065075.8E-34260343IPR010525Auxin response factor
SuperFamilySSF542772.42E-8762848No hitNo description
PfamPF023094.5E-8764857IPR033389AUX/IAA domain
PROSITE profilePS5174525.137772856IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MKLSLSAGGG LQDQPASPEE AEENKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHGEQV  60
AASTNKEMES QIPNYPSLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP  120
AELGSASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFNQQPP AQELIAKDLH  180
GNDWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRASRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP CEFVIPLSKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGEKQPRVSL  360
WEIEPLTTFP MYPSPFALGL KRPWPTGLPS LYGGRDDGLT SSLMWLRDGA NPSFQSLNFG  420
GLGASPWMQP RMDNSLLGLQ SDMYQTIAAA AALQGTTKQI SPSVMQFQQP QNIVGRSALL  480
SSQIMQQARP QFQQIYNQNI NDSTVQGHTQ AEYLQEQLQC SQSFNEQKPQ LHPQQQHQES  540
QQQQECVQTP QNQQLHCLPN ALSAFSQLSS VTQSPSSTLP TVPAFSNQNF PDTNVSSLTP  600
SGGSSMQGML GQLPSEAASN LPCVARTTPL PISDPWSSKR VAVESVNPSR PHAVSTQIEQ  660
LDMTPCNLPQ NSALAPLPGR GCLVDQDGSS DPQNHLLFGV NIDSQSLLMQ GGIPGHQNDN  720
VSRTIPYSTS NFLSPSQDDF PLNQPLPSAG CLDESGYVPC AENSEQANQQ FSTFVKVYKS  780
GTIGRLLDIT RFSSYDELRS EVGRLFGLEG QLEDPLRSGW QLVFVDGEDD VLLVGDDPWQ  840
EFVNSVSCIK ILSPEEVQQM GKQGIQLLSS APARRLSNGC DSYVSRQESR SLSTGMAQVG  900
SVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1592736451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823935.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2S3GLJ50.0A0A2S3GLJ5_9POAL; Auxin response factor
STRINGPavir.Aa03303.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]