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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A00227.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Nin-like | ||||||||
Protein Properties | Length: 755aa MW: 79673.6 Da PI: 5.4664 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 86.4 | 2.4e-27 | 515 | 564 | 2 | 51 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek++sle+l+ yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki++ Pahal.A00227.1 515 EKTVSLEVLQLYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISK 564 799*********************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.291 | 501 | 585 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.4E-24 | 517 | 564 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.58E-19 | 648 | 719 | No hit | No description |
PROSITE profile | PS51745 | 20.208 | 649 | 742 | IPR000270 | PB1 domain |
SMART | SM00666 | 8.9E-18 | 649 | 742 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 4.4E-23 | 650 | 717 | No hit | No description |
Pfam | PF00564 | 3.1E-14 | 650 | 719 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 755 aa Download sequence Send to blast |
MVMEMDADMD GVIQRFDHRL DRDGGSRGTD ACGSDRDRSR GGSGGGGGEG AEGKEEVGGG 60 GAVKERIARA LRIYKEAAAG DGGGALVQVW APVRDGGRRV LATRDQPFVL AAPQCHRLFQ 120 YRTVSLTHAF PVGGAGVPGE RGLPGRVFDA GAPEWTPNVQ YYGTGEYARI SYALIYDIQA 180 ALALPILDPG TGSCVAVVEL VTTSPRLRFA AEVDKLSKAL QAVALRGSEI CRPAAEVSDD 240 EAAQLAMSEV SDILTTVGEA HKLPLAQAWV RCKRCSTSTE HASLMAAGTP YYLADADQSL 300 IGFREACVEH HLRPGRGGLV EEAAAARGPR FCADVTKYSM DAYPLAHHAR FCGLAGCLAV 360 CVQLRRDNND NGSMDDGSRE QCVLEFFVPP DCREGAAQKA AADAVAATVT ERFGNAHLKA 420 IDISGLQDLA FEIVADGECV LRPDRVVMAD APEVELNDHG GGDERDSDEE GLHLASAVGA 480 ADIEAPKMNN DDENGGEDPR SQVGEKKKKA KRKGEKTVSL EVLQLYFSGS LKDAARSLGV 540 CPTTMKRICR QHGISRWPFR KISKANRSLD KIKRVFESVP GSTNPMAAST PAAAVSHQAP 600 AAATARGGHA LPCLSSALGV TSSQGSCQAP PPPKDAALRT PLHGVDAGVV TVKASYRGDI 660 IRFRVPSSAG VATVKGEVAK RLGLEASEFD VKYLDDDNEW VLLSCDDDFQ ECLEVVPALS 720 GASSLSGSAL AQPVVRLMVQ EVPENHGSSC GSSE* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823617.1 | 0.0 | protein NLP3-like | ||||
TrEMBL | A0A2S3GLE7 | 0.0 | A0A2S3GLE7_9POAL; Uncharacterized protein | ||||
STRING | Si016430m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6269 | 29 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 1e-110 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A00227.1 |